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jsxlei / SCALE

Single-cell ATAC-seq analysis via Latent feature Extraction
MIT License
97 stars 17 forks source link

SyntaxError: keyword argument repeated #15

Closed plbaldoni closed 4 years ago

plbaldoni commented 4 years ago

I am having issues to install/use SCALE. First, I created a conda environment and installed SCALE:

conda create -n SCALE python=3.6 pytorch
conda activate SCALE

git clone git://github.com/jsxlei/SCALE.git
cd SCALE
python setup.py install

It seems the installation went smoothly as I did not get any error messages. However, by running SCALE.py I get the following error:

  File "/nas/longleaf/home/baldoni/SCALE/SCALE.py", line 165
    save=os.path.join(outdir, 'emb_{}.pdf'.format(args.emb)), save=os.path.join(outdir, 'emb_{}.txt'.format(args.emb)))
                                                             ^
SyntaxError: keyword argument repeated

Am I missing something here?

I appreciate your help. Pedro

jsxlei commented 4 years ago

This error has been fixed, you can git clone the update code and install it again. Thanks for pointing out this error.

plbaldoni commented 4 years ago

Great, thanks!