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jsxlei / SCALE

Single-cell ATAC-seq analysis via Latent feature Extraction
MIT License
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Should the reproduced image be exactly the same as the one in the article? #26

Open zczali4403 opened 1 year ago

zczali4403 commented 1 year ago

Hi, I have reproduced using the data mentioned in the article and although both the tSNE plot and the UMAP plot show that they can separate the cell taxa correctly, the position and shape of the cell taxa are not quite the same as the picture in your article, is this normal?

jsxlei commented 1 year ago

Hi, it is normal if the metrics e.g. ARI, NMI are same or close since there have been several updates of the SCALE version, dependent packages and random seed, it is not likely to reproduce the exactly the same results.

zczali4403 commented 1 year ago

OK，thank you very much!