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jtleek
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sva-devel
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ComBat-met added
#62
JmWangBio
opened
1 month ago
0
Potential issue with sva_network
#61
s-a-nersisyan
opened
4 months ago
0
SVA() : Error in density.default(x, adjust = adj) : 'x' contains missing values
#60
sarakn97
opened
1 year ago
0
combat for epic array data
#59
bioinfonext
opened
1 year ago
0
Update ComBat.R
#58
elies-ramon
opened
1 year ago
3
What to do when n.sv is large
#57
bhallmar
opened
1 year ago
0
Correct way to use n.sv() on count based data: normalize or no?
#56
zntaylgit
opened
1 year ago
0
Should the data be scaled before running Combat?
#55
lincj1994
opened
2 years ago
2
Runtime of Combat
#54
WarrenSu2022
opened
2 years ago
2
Should Combat be performed if I want to compare a signature score between TCGA RNA-seq and our own RNA-seq data?
#53
lincj1994
closed
2 years ago
2
Combat returns negative values.
#52
lincj1994
closed
2 years ago
3
Can you add the parameter of ref.batch in ComBat-Seq?
#51
lincj1994
closed
2 years ago
5
fix spacing issues
#50
schifferl
closed
2 years ago
0
Combat-seq in two batches of RNA-seq with different reference genomes.
#49
lincj1994
closed
2 years ago
1
Speed up match_quantiles function for ComBat_seq functon
#48
lrf2019
opened
3 years ago
0
Iteration (out of 5 ):Error in density.default(x, adjust = adj) : 'x' contains missing values
#47
romunov
closed
3 years ago
2
ComBat doesn't work when data matrix contains only 1 variable
#46
lashmore
opened
3 years ago
0
Error in `return()` call in `fsva()`.
#45
rorynolan
opened
3 years ago
0
How do I use ComBat_seq to get the matrix count after removing the batch
#44
BeyondMyPast228
opened
3 years ago
1
sva Vignettes example qValues vs qValuesSv
#43
arkyl
opened
4 years ago
0
Error in while (change > conv) { : missing value where TRUE/FALSE needed
#42
huangl07
opened
4 years ago
11
update documentation for sva_network
#41
princyparsana
closed
4 years ago
0
combat-seq input
#40
saicharanp18
closed
4 years ago
1
Adding combat-seq to sva
#39
zhangyuqing
closed
4 years ago
5
sva_network Example(sva_network) should show transposed matrix
#38
InesdeSantiago
opened
4 years ago
0
Combat returns NaN
#37
vkorobeynyk
opened
5 years ago
6
Suggested clarification of contrasts matrix in vignette
#36
lefeverde
opened
5 years ago
0
coerce dat into matrix & address zero variance genes within any single batch
#35
zhangyuqing
closed
4 years ago
0
f.pvalue function gives absurd results on zero-variance rows
#34
DarwinAwardWinner
opened
6 years ago
2
When plotting ComBat prior.plots, save the original state of the graphical parameters
#33
dfjenkins3
closed
4 years ago
2
Update ComBat.R
#32
kasperdanielhansen
closed
6 years ago
2
Some small changes
#31
cafletezbrant
closed
6 years ago
0
Added spacing to messages
#30
Shians
closed
6 years ago
2
Minor fix to absent spaces in messages
#29
oganm
closed
7 years ago
1
Improve consistency among message, warnings, and errors
#28
DarwinAwardWinner
opened
7 years ago
1
Error in density.default
#27
royfrancis
opened
7 years ago
6
Fixed the bug from a month ago
#26
cafletezbrant
closed
7 years ago
0
Fixes for edge cases of n.sv <= 1
#25
DarwinAwardWinner
closed
7 years ago
1
ComBat fails with updated ComBat.R
#24
cafletezbrant
opened
7 years ago
4
Edits to ComBat
#23
kasperdanielhansen
closed
7 years ago
0
removing files commited by mistake
#22
kasperdanielhansen
closed
7 years ago
3
Fix issues in ComBat prior plotting code
#21
DarwinAwardWinner
closed
7 years ago
1
Performing ComBat without standardizing data?
#20
jakeyeung
closed
7 years ago
2
X and Y axes for ComBat QQ plots are not consistent
#19
DarwinAwardWinner
closed
7 years ago
0
remove B for irwsva.build
#18
yufree
opened
7 years ago
0
perhaps I should turn off "(add-hook 'before-save-hook 'delete-traili…
#17
abelew
opened
7 years ago
0
Add BiocParallel support for ComBat
#16
DarwinAwardWinner
closed
7 years ago
3
adding degradation correction
#15
andrewejaffe
closed
8 years ago
0
ComBat silently fails when a row has non-zero values for only a single batch and mean.only=TRUE
#14
khughitt
opened
8 years ago
19
Exclude rows with no variance from batch adjustment
#13
khughitt
opened
8 years ago
3
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