Code and data to reproduce the comparison in "IMmuneCite: an open-source workflow for processing multiplex images and analysis of immune enriched spatial proteomic data". Any data not available in this repository can be requested by contacting the corresponding author (see manuscript link below).
IMmuneCite pre-processing and clustering pipelines can be found under the "IMmuneCite_Pipeline" repository at https://github.com/julietusc/IMmuneCite_Pipeline.git
Citation:
Arianna Barbetta, Sarah Bangerth, Jason T.C. Lee et al. IMmuneCite: an integrated workflow for analysis of immune enriched spatial proteomic data, 09 July 2024, PREPRINT (Version 2) available at Research Square [https://doi.org/10.21203/rs.3.rs-4571625/v2]