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junlabucsd
/
mm3
Version 3 of Python mother machine analysis code
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Stack phase & fluorescence TIFFs if separated
#155
rthiermann
closed
2 years ago
0
Dev
#154
rthiermann
closed
2 years ago
0
Dev
#153
rthiermann
closed
2 years ago
0
M1 bug fixes
#152
Eigenboy
closed
2 years ago
0
Fix centroid assignment typo
#151
rthiermann
closed
2 years ago
0
Deal with unstacked phase and fluorescence planes
#150
rthiermann
closed
2 years ago
0
Dev foci
#149
rthiermann
closed
2 years ago
0
Dev foci
#148
rthiermann
closed
2 years ago
0
Merge pull request #143 from junlabucsd/dev
#147
rthiermann
closed
2 years ago
0
Updates to automated focus tracking
#146
rthiermann
closed
2 years ago
0
Updates to automated focus tracking
#145
rthiermann
closed
2 years ago
0
Automated focus tracking
#144
rthiermann
closed
2 years ago
0
Update mm3_helpers.py
#143
rthiermann
closed
2 years ago
0
Dl focus track
#142
rthiermann
opened
3 years ago
0
Dev
#141
rthiermann
closed
3 years ago
0
Add U-net training notebook
#140
rthiermann
closed
3 years ago
0
Fixing several bugs.
#139
gletreut
closed
4 years ago
0
bug fix in CellTrackGUI
#138
jwschroeder3
closed
4 years ago
0
generalized get_img parameter in mm3_curateTrainingData.py
#137
jwschroeder3
closed
4 years ago
0
fixed segment-unet bug
#136
jwschroeder3
closed
4 years ago
0
mm3_ChannelPicker.py
#135
jwschroeder3
closed
4 years ago
0
Tutorial
#134
aaristov
opened
4 years ago
3
Re-render Jupyter notebooks
#133
jtsauls
opened
4 years ago
0
Started working on GUI for focus tracking
#132
jwschroeder3
closed
4 years ago
0
plotting from outputdata.py
#131
DanielVillarreal09
opened
4 years ago
0
commented out some unnecessary stuff in tracking
#130
jwschroeder3
closed
5 years ago
0
new readme
#129
jtsauls
closed
5 years ago
0
Merging jwschroeder3/mm3/master with junlabucsd/mm3/master
#128
jwschroeder3
closed
5 years ago
1
U-net is now the master branch
#127
jtsauls
closed
5 years ago
0
Bug fixes and organizational changes.
#126
jtsauls
closed
5 years ago
0
movie maker image start bug
#125
DanielVillarreal09
opened
5 years ago
0
Unet
#124
jwschroeder3
closed
5 years ago
0
track gui
#123
jwschroeder3
closed
5 years ago
0
Unet
#122
jwschroeder3
closed
5 years ago
0
Added support for false joins of distinct cells into single regions
#121
jwschroeder3
closed
5 years ago
0
Unet
#120
jwschroeder3
closed
5 years ago
0
Give track gui functionality to update segmentations and re-label masks in back end
#119
jwschroeder3
opened
5 years ago
0
Fixed bug in advancing trap/fov in tracking gui
#118
jwschroeder3
closed
5 years ago
0
Unet
#117
jwschroeder3
closed
5 years ago
0
Yet another tracking gui update
#116
jwschroeder3
closed
5 years ago
0
Updates to tracking GUI.
#115
jwschroeder3
closed
5 years ago
0
Unet
#114
jtsauls
closed
5 years ago
0
more tracking gui work
#113
jwschroeder3
closed
5 years ago
0
Initial work on tracking training data gui
#112
jwschroeder3
closed
5 years ago
0
Quick bug fix for mm3_Commit.py
#111
jwschroeder3
closed
5 years ago
0
Make channel picker with do_seg more efficient
#110
jwschroeder3
closed
5 years ago
0
Reworked channel picking to use semantic segmentation of cells
#109
jwschroeder3
closed
5 years ago
0
Fixed mm3_Compile bug for images with fewer than three imaging channels.
#108
jwschroeder3
closed
5 years ago
0
Docker support
#107
jtsauls
closed
5 years ago
0
GUI loads re-annotated masks if they exist instead of showing old mask
#106
jwschroeder3
closed
5 years ago
0
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