Can you share the source FASTA for `resources/mobiome/54_mobiles_inclHERVK`

jyhehir / mobster

For more details about Mobster please see

https://jyhehir.github.io/mobster/index.html

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Can you share the source FASTA for `resources/mobiome/54_mobiles_inclHERVK` #17

Closed SHuang-Broad closed 5 years ago

SHuang-Broad commented 5 years ago

Hi Jayne,

I am experimenting with replacing MOSAIK with BWA MEM for read re-mapping, but it seems that Mobster ships with resources/mobiome/54_mobiles_inclHERVK.dat, which is a custom format for MOSAIK.

Is it possible for you to share the FASTA file that you used in building those dat and jmp files (I'm assuming you MosaikBuild and MosaikJump ed the resources)?

Thank you very much!

Steve

SHuang-Broad commented 5 years ago

I solved the problem myself. Just for future reference: I went to download the special reference FASTA sequence at Repbase, where a registration is required.