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jyhehir / mobster

For more details about Mobster please see
https://jyhehir.github.io/mobster/index.html
GNU General Public License v3.0
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Genotyping and annotation #25

Open josesovaz opened 5 years ago

josesovaz commented 5 years ago

Hello jyhehir,

I have one question related to mobster vcfs (created with MobsterVCF).

Is it possible to genotype and/or annotate the resulted vcfs with any program? If so, could you give me some clues of how to do that?

Thank you in advance.

Regards,

Jose

jyhehir commented 5 years ago

Hi, generation of VCF's is currently available as a stand alone tool to be run after the main mobster.But currently does not provide genotypes, this is scheduled for the next release. To convert the mobster output file into vcf, you can use the jar file provided inresources/MobsterVCF/MobsterVCF-0.0.1-SNAPSHOT.jar Regards,Jayne

On Friday, 31 May 2019, 4:00:41 pm GMT+2, josesovaz <notifications@github.com> wrote:

Hello jyhehir,

I have one question related to mobster vcfs (created with MobsterVCF).

Is it possible to genotype and/or annotate the resulted vcfs with any program? If so, could you give me some clues of how to do that?

Thank you in advance.

Regards,

Jose

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