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jyhehir / mobster

For more details about Mobster please see
https://jyhehir.github.io/mobster/index.html
GNU General Public License v3.0
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How can I find source elements? #41

Closed kaanokay closed 3 years ago

kaanokay commented 4 years ago

Hi,

I obtained mobster outputs with no issues.

I am wondering that how can I find the source element causing transposable insertion? Mobster outputs have no information about that. Namely, I want to find that inserted transposable elements coming from where or originated from which transposable element?

Thanks.

jyhehir commented 4 years ago

Hi Kaan,

This is sometimes not 100% clear and depends a little on how long the reads are. At this point we only include the super family in the predictions.txt. But individual reads that map to the mobiome, and hence a mei can be extracted from the intermediate file (mobster.out_mappedpotentials.bam).

Regards, Jayne

kaanokay commented 4 years ago

Hi Jayne,

Thanks for your detailed response. I will try it.

Best regards.