kaczmarj tumor-microenvironment-analysis issues

kaczmarj / tumor-microenvironment-analysis

Code related to the analysis of tumor microenvironment in digital whole slide images.

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Delete Dist_to_Hist.py

#25 Shauqi opened 2 years ago
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how to combine csv files in linux

#24 kaczmarj opened 2 years ago
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JSON codes are embedded in Data_Extraction.py

#23 Shauqi closed 2 years ago
1
add scripts to be used on server

#22 kaczmarj closed 2 years ago
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normalization

#21 kaczmarj opened 2 years ago
1
get numbers of cells in histograms / cdfs

#20 kaczmarj opened 2 years ago
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add continuous integration for tumor_microenv.py

#19 kaczmarj closed 2 years ago
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reduce code duplication

#18 kaczmarj opened 2 years ago
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fix: skip plotting nones

#17 kaczmarj closed 2 years ago
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look into GIST method

#16 kaczmarj opened 2 years ago
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add exception for missing central patches

#15 kaczmarj closed 2 years ago
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add whole slide image analysis workflow

#14 kaczmarj closed 3 years ago
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filter out patches with small tumor regions

#13 kaczmarj opened 3 years ago
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only use exterior tumor boundaries

#12 kaczmarj closed 3 years ago
1
do not consider boundaries inside a tumor

#11 kaczmarj closed 3 years ago
1
add visualizations

#10 kaczmarj opened 3 years ago
1
implement analysis for whole slide image

#9 kaczmarj closed 3 years ago
1
style with black

#8 kaczmarj closed 3 years ago
0
remove example and fakedata notebooks

#7 kaczmarj closed 3 years ago
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Dev

#6 kaczmarj closed 3 years ago
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how can we trust this method?

#5 kaczmarj opened 3 years ago
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determine if CDFs are statistically different

#4 kaczmarj opened 3 years ago
2
bug: do not consider cells in blank tiles

#3 kaczmarj closed 3 years ago
0
implement normalization methods

#2 kaczmarj closed 2 years ago
1
modify thresholds for K17+ and K17-

#1 kaczmarj closed 3 years ago
2