expression.txt
is expression profiles from proteins or mRNAs
trait.txt
is trait matrix,but is also a optional file. If there is no trait data, you can use group data instead. First column is sample id, second column is sample group id.
S-control-1 S-control
S-control-2 S-control
S-control-3 S-control
S-NHPS-L-1 S-NHPS-L
S-NHPS-L-2 S-NHPS-L
S-NHPS-L-3 S-NHPS-L
S-NHPS-H-1 S-NHPS-H
S-NHPS-H-2 S-NHPS-H
S-NHPS-H-3 S-NHPS-H
F-control-1 F-control
F-control-2 F-control
F-control-3 F-control
F-NHPS-L-1 F-NHPS-L
F-NHPS-L-2 F-NHPS-L
F-NHPS-L-3 F-NHPS-L
F-NHPS-H-1 F-NHPS-H
F-NHPS-H-2 F-NHPS-H
F-NHPS-H-3 F-NHPS-H
All result files and photos from wgcna analysis in Demo
The default values of WGCNA networkType/TOMtype is unsigned
If trait_form is equal to 1, you shoud have trait matrix, otherwise group data instead