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karel-brinda / MiniPhy

Phylogenetic compression of extremely large genome collections [661k β†˜πŸ­πŸ²π—šπ—Άπ—• | BIGSIdata β†˜πŸ°πŸ΄π—šπ—Άπ—• | AllTheBact'23 β†˜πŸ³πŸ±π—šπ—Άπ—•]
https://brinda.eu/mof
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Replace mashtree by attotree #77

Closed karel-brinda closed 10 months ago

karel-brinda commented 10 months ago

Replacing mashtree by attotree (https://github.com/karel-brinda/attotree). It gives identical outputs, but it's many times faster and has very little dependencies.