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karel-brinda / NanoSim-H

NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
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Make case_convert about a million times faster for long sequences #18

Closed ExplodingCabbage closed 5 years ago

ExplodingCabbage commented 5 years ago

(Probably not hyperbole. A 100-million base sequence that case_convert was going to take ~ 10 days to process before now takes <5 seconds.)

karel-brinda commented 5 years ago

This very suboptimal. Thank you for the fix!