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Author(s): Ross, Connor & Wells, Katie

Instructor: Handel, Andreas PhD

Course: EPID 8060

Semester: Spring 2023

Title: Potential Drivers of COVID-19 Vaccine Administration Differences in the US

Manuscript: Manuscript.docx (Manuscript.docx -> products -> connor-katie-MADA-project)

Code Run Order/Reproducibility:

• Code files can be found in the 'code' folder of the project. See below for specific file locations.

• In order to ensure that this project is reproducible and all files generate as intended. Please run in the following order from first to last

  1. wrangling.qmd (wrangling.qmd -> processing_code -> code -> connor-katie-MADA-project)

  2. exploration.qmd (exploration.qmd -> processing_code -> code connor-katie-MADA-project)

  3. fitting.qmd (fitting.qmd -> analysis_code -> code -> connor-katie-MADA-project)

  4. analysis.qmd (analysis.qmd -> analysis_code -> code -> connor-katie-MADA-project)

  5. Manuscript.qmd (Manuscript.qmd -> manuscript -> products -> connor-katie-MADA-project)

Data/Data Files Information:

• raw_data: COVID-19_Vaccinations_in_the_United_States_Jurisdiction.csv -> raw_data -> data -> connor-katie-MADA-project (OR raw_data.rds - same location)

  • From: Centers for Disease Control and Prevention. Data.CDC.gov. COVID-19 Vaccinated in the United States, Jurisdiction. https://data.cdc.gov/Vaccinations/COVID-19-Vaccinations-in-the-United-States-Jurisdi/unsk-b7fc

• processed_data: SubData.csv -> processed_data -> data -> connor-katie-MADA-project ( OR SubData.rds - same location)

  • Added Region based on state as well as filtered for years of interest 21 - 22.

Code Files Information:

• Wrangling/Preparing the Data (wrangling.qmd -> processing_code -> code -> connor-katie-MADA-project)

  • Imports raw dataset. Formats date

  • Creates SubData which add US Region based on state information. Filters for years of interest 21 - 22

  • Lays framework for the graphs used in exploration of the data (found in exploration.qmd).

• Exploration/Exploring and Visualizing the Data (exploration.qmd -> processing_code -> code -> connor-katie-MADA-project)

  • Run to see the following visualizations:

    • Vacccine Distribution Overtime by Manufac. US Wide

    • Vaccine Administration Overtime by Manufac. US Wide

    • Vaccines Administered in Southeast Region

    • Vaccines Administered in Northeast Region

    • Vaccines Administered in MidWest Region

    • Vaccines Administered in SouthWest Region

    • Vaccines Administered in West Region

Fitting Models

• Fitting Models (fitting.qmd -> analysis_code -> code -> connor-katie-MADA-project)

  • lm1:

    • Outcome: Overall vaccine count

    • Predictor: Region

  • lm2 - lm6:

    • Outcome: \ Administered

    • Predictor: Region

  • lm7:

    • Outcome: Administered (total)

    • Predictor: Region & Distributed (total)

  • lm8:

    • Outcome: Administered (total)

    • Predictor: Region

  • lm9:

    • Outcome: Administered (total)

    • Predictor: Distributed (total)

  • NOTE: Some include 'model checks'