kauwelab / PolyRiskScore

PRSKB is a website and command-line interface tool for calculating polygenic risk scores using GWA studies from the NHGRI-EBI Catalog.
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Percentile value not reported when the input file format is VCF #433

Open mfasold opened 3 months ago

mfasold commented 3 months ago

I ran the tool twice with the two supported input file formats, VCF and "rsIDs:genotype" (otherwise the same parameters). While for the latter the percentile was reported in the last column, the output file obtained from a VCF input had no percentiles. Instead, it reported only the name of the sample in the first line of that column.