kbaseattic relation_engine_spec issues

kbaseattic / relation_engine_spec

Specifications and config for the KBase Relation Engine

https://kbase.us

MIT License

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Adding moved notice

#146 ialarmedalien closed 4 years ago
0
add total_count

#145 zhlu9890 closed 4 years ago
1
Reorganising cluster data

#144 ialarmedalien opened 4 years ago
2
update GO_get_associated_ws_objects.yaml to add feature_count and add…

#143 zhlu9890 closed 4 years ago
1
Exascale networking - updates

#142 ialarmedalien closed 4 years ago
1
update GO_get_associated_ws_objects.yaml to add total features count and put offset+limit on ws_obj group

#141 zhlu9890 closed 4 years ago
1
Add query to fetch all verts and edges in djornl

#140 jayrbolton closed 4 years ago
0
Djornl cluster query tweaks

#139 jayrbolton closed 4 years ago
0
Add query to find clusters and all neighbors

#138 jayrbolton closed 4 years ago
1
Exascale data gene search

#137 jayrbolton closed 4 years ago
0
Add djornl importer module and subdir

#136 jayrbolton closed 4 years ago
2
Add Arabidopsis network queries and schemas

#135 jayrbolton closed 4 years ago
1
Return workspace data in the related objects query

#134 jayrbolton closed 4 years ago
0
Remove show_private and show_public params; return the root object data and type

#133 jayrbolton closed 4 years ago
0
Add workspace query for related objects

#132 jayrbolton closed 4 years ago
0
add more ontology queries

#131 zhlu9890 closed 4 years ago
1
update queries to make GO and ontology consistent

#130 zhlu9890 closed 4 years ago
0
adding generic ontology queries

#129 zhlu9890 closed 4 years ago
2
Dont filter out expired taxon verts when fetching the taxon for a ws obj

#128 jayrbolton closed 4 years ago
0
Change gtdb_taxon.name to gtdb_taxon.scientific_name

#127 jayrbolton closed 4 years ago
0
Change data source name of "gtdb_taxonomy" to "gtdb"

#126 jayrbolton closed 4 years ago
0
Species/strain query

#125 jayrbolton closed 4 years ago
2
Add option not to count results for search sciname query

#124 jayrbolton closed 4 years ago
0
Generic taxonomy queries

#123 jayrbolton closed 4 years ago
0
Add views for Compounds and Reactions plus README

#122 scanon closed 4 years ago
0
Fix stored query; move WITH clause into prefix

#121 jayrbolton closed 4 years ago
0
Add a set of yaml files that describe RE import data sources for UI and documentation purposes

#120 jayrbolton closed 4 years ago
0
Add delta load registry collection and fix indexes

#119 MrCreosote closed 4 years ago
0
Add NCBI merge collection

#118 MrCreosote closed 4 years ago
0
Add delta loader indexes to delta schemas

#117 MrCreosote closed 4 years ago
0
update GO queries

#116 zhlu9890 closed 4 years ago
2
Add RDP schemas

#115 MrCreosote closed 5 years ago
2
Add another test query; clean up AQL syntax; move into test subdir

#114 jayrbolton closed 5 years ago
1
Add strain field to ncbi_taxon and rank/strain filter to sciname search query

#113 MrCreosote closed 5 years ago
2
Add query and test to fetch a taxon by scientific name

#112 jayrbolton closed 5 years ago
1
Update the GTDB schemas to reflect what's actually loaded.

#111 MrCreosote closed 5 years ago
1
Aliasing and subgraphs

#110 jayrbolton opened 5 years ago
0
Add new GO queries

#109 zhlu9890 closed 5 years ago
3
Return workspace info for ncbi_taxon_get_associated_ws_objects

#108 jayrbolton closed 5 years ago
1
Add metadata to ws_workspace; add more required fields; fix tests

#107 jayrbolton closed 5 years ago
1
Update feature key regex

#106 MrCreosote closed 5 years ago
1
Fetch taxon doc from workspace object ref

#105 jayrbolton closed 5 years ago
1
Add object type information for ncbi taxon->object query

#104 jayrbolton closed 5 years ago
0
Bugfix on fetching results for get_children and get_siblings. Return …

#103 jayrbolton closed 5 years ago
0
Add _key description to feature->GO edge

#102 MrCreosote closed 5 years ago
0
Optimize and fix details of ncbi queries

#101 jayrbolton closed 5 years ago
0
Add GO_merges from index, _key for obj->feature edges

#100 MrCreosote closed 5 years ago
0
Add queries to get a set of GO terms and a set of GO merges

#99 MrCreosote closed 5 years ago
1
Allow "select" options to be null, which selects all. Add a minimal test

#98 jayrbolton closed 5 years ago
2
Remove GO_test schemas

#97 jayrbolton closed 5 years ago
3