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kcleal
/
dysgu
Toolkit for calling structural variants using short or long reads
MIT License
92
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11
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Support for Python 3.11
#59
tbenavi1
closed
1 year ago
2
input bam files refinements
#58
linsson
closed
1 year ago
2
Can dysgu be used in haploid genome?
#57
wushyer
closed
1 year ago
5
Segfault only when using --regions and not --contigs False
#56
moraglewis
closed
1 year ago
6
Merging samples VCFs
#55
mkohailan
closed
1 year ago
8
AttributeError: module 'numpy' has no attribute 'float'
#54
xiekunwhy
closed
1 year ago
2
somatic filter sv script
#53
kearseya
closed
1 year ago
0
About Pacio ccs.bam
#52
ClarenceHsiang
closed
1 year ago
1
Type error: '<' not supported between instances of 'bool' and 'str'
#51
distilledchild
closed
1 year ago
26
RAM Issue - merging large cohorts
#50
lurens
closed
1 year ago
14
Error while trying to clone the repository
#49
mkyriak
closed
1 year ago
2
Bug in re-mapping?
#48
johannesgeibel
closed
2 years ago
2
Merging genotype files
#47
arunvv90
closed
2 years ago
7
Hi,
#46
arunvv90
closed
2 years ago
0
Invalid character '.' in 'GQ' FORMAT field
#45
arunvv90
closed
2 years ago
5
Multiprocessing error
#44
mc-er
closed
2 years ago
14
SV calling NOT working
#43
sachingadakh
closed
2 years ago
2
re-using temp files with --ibam
#42
husamia
closed
2 years ago
4
Merging SV from Oxford Nanopore - expected runtime
#41
agolicz
closed
2 years ago
3
changing default argument when high read depth
#40
splaisan
closed
2 years ago
5
running docker container fails
#39
splaisan
closed
2 years ago
2
input vcf cannot be read
#38
nponts
closed
2 years ago
2
Best protocol about dysgu run/merge with WGS 35X from multiple patients? Calling cohorts
#37
Taalouane
closed
1 year ago
8
Error running 1.3.10
#36
holtjma
closed
2 years ago
3
PacBio CLR reads failing with Nanopore setting
#35
AQWixom
closed
2 years ago
4
TRA variants
#34
Akazhiel
closed
2 years ago
5
Read Depth
#33
Akazhiel
closed
2 years ago
1
Error with --max-cov auto
#32
jdemeul
closed
2 years ago
2
Error - pip3 dysgu installation
#31
KristinaGagalova
closed
2 years ago
5
linux-debs install
#30
kearseya
closed
2 years ago
0
Installation "fixes"
#29
kearseya
closed
2 years ago
1
Dysgu Cluster
#28
assane-mbodj
closed
2 years ago
3
PacBio long reads?
#27
beantkapoor786
closed
1 year ago
3
Reporting only SVs from --sites for genotyping
#26
wbooker
closed
2 years ago
3
redundant results and insertion variants recording
#25
biozzq
closed
2 years ago
3
Manual installation
#24
colindaven
closed
2 years ago
4
Pickle Warning in run command
#23
nickhsmith
closed
2 years ago
1
Does the merge command work for translocations?
#22
tbenavi1
closed
2 years ago
7
Installation Note
#21
nickhsmith
closed
1 year ago
38
Location on CHR2 for translocations
#20
tbenavi1
closed
2 years ago
2
Coverage of reads
#19
arunvv90
closed
2 years ago
7
Supporting reads
#18
RenzoTale88
closed
2 years ago
6
Issue writing REP metric to VCF
#17
pblaney
closed
2 years ago
3
Zero Division Error During Call Component
#16
pblaney
closed
2 years ago
4
Problem in re genotyping a sample using merged sites
#15
edg1983
closed
2 years ago
4
small duplication false negative
#14
husamia
closed
2 years ago
10
Large memory request
#13
holtjma
closed
3 years ago
8
Segmentation fault
#12
husamia
closed
3 years ago
2
KeyError: "sequence '1' not present"
#11
husamia
closed
3 years ago
1
how to get actual inserted/deleted sequence
#10
brentp
closed
2 years ago
10
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