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kevinjohncutler / omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation
https://omnipose.readthedocs.io
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Kernal crashed when running the mono_channel_bact note book on iMAC with M3 chip #100

Open MoZhou519 opened 3 months ago

MoZhou519 commented 3 months ago

Hi all, When I tried to run the Jupyter note book file called "mono_channel_bact", the kernal dies every time at the first place. The pc I'm using is iMac with M3 chip. I set up the environment exactly as instruction in readme. Does anyone have the same issue?

kevinjohncutler commented 3 months ago

I haven't had that issue on M1 or M2, but excitingly, I did recently get Omnipose working in pyenv (much more simple than conda, and the conda env that I posted has some outdated packages). You can try updating pytorch etc. in your existing conda env, or set up a pyenv environment and install the github version in that.