098-117 shape mismatch in testing set

[JunMa11]

Dear Omnipose,

Thanks for sharing the awesome work. I find some cases have shape-mismatch issues in the testing set.

image name mask name image shape mask shape 098_img.png 098_img_masks.png (401, 190) (215, 520) 099_img.png 099_img_masks.png (150, 173) (482, 750) 100_img.png 100_img_masks.png (800, 624) (1031, 767) 101_img.png 101_img_masks.png (62, 113) (522, 347) 102_img.png 102_img_masks.png (317, 67) (840, 765) 103_img.png 103_img_masks.png (671, 469) (491, 286) 104_img.png 104_img_masks.png (600, 600) (251, 153) 105_img.png 105_img_masks.png (600, 600) (635, 312) 106_img.png 106_img_masks.png (600, 600) (635, 908) 107_img.png 107_img_masks.png (600, 600) (350, 305) 108_img.png 108_img_masks.png (590, 600) (418, 218) 109_img.png 109_img_masks.png (600, 600) (531, 144) 110_img.png 110_img_masks.png (600, 600) (401, 190) 111_img.png 111_img_masks.png (600, 600) (150, 173) 112_img.png 112_img_masks.png (600, 596) (800, 624) 113_img.png 113_img_masks.png (600, 591) (1709, 1524) 114_img.png 114_img_masks.png (600, 600) (316, 270) 115_img.png 115_img_masks.png (596, 600) (1429, 1009) 116_img.png 116_img_masks.png (600, 600) (366, 284) 117_img.png 117_img_masks.png (600, 600) (798, 226)

[gatoniel]

Hi, I have similar problems. Maybe this is also related to #1 ? I am currently using your cool dataset, but it would be even better, if these minor problems could somehow be resolved or at least be explained?

[kevinjohncutler]

@JunMa11 @gatoniel, sorry about that, must be a problem with how I exported it to the cellpose site. I will fix it and post a link to where we will be hosting the updated test dataset.

[kevinjohncutler]

@gatoniel @JunMa11 please check the ground truth repository for the updated dataset. The shape mismatch should be fixed and the test set has been expanded. We have also posted a several more datasets (worms, fluorescent bacteria).

[JunMa11]

@kevinjohncutler Thank you very much!