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kevinjohncutler / omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation
https://omnipose.readthedocs.io
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Plant_cp model web address #36

Closed jklebes closed 1 year ago

jklebes commented 1 year ago

Running the plant_cp model for the first time does not work with 

2023-01-20 11:03:52,508 [INFO] Downloading: "https://www.cellpose.org/models/plant_cptorch_1" to C:\Users\jklebes\.cellpose\models\plant_cptorch_1

https://www.cellpose.org/models/plant_cptorch_1 C:\Users\jklebes001\.cellpose\models\plant_cptorch_1
ERROR: HTTP Error 500: INTERNAL SERVER ERROR

and the website can't be found with a browser either. However I was able to download and add a model from https://www.cellpose.org/models/plant_cptorch_0. I think you simply need to amend the web address in the source code if you meant this model.

jklebes commented 1 year ago

The problem seems to be that pant_cp model attempts to download plant_cptorch_0, plant_cptorch_1, ... , sucessfully downloading the first one and getting an error at the second. This happens both when "average 4 nets" and "run 1 net" are selected in GUI.

kevinjohncutler commented 1 year ago

@jklebes Ah yes, sorry about that. The current code catches any omni models from defaulting to averaging 4 nets, but I forgot to do that for the plant models. I've now pushed the fix to the cellpose-omni repo.

jklebes commented 1 year ago

Thanks! You might want to check worm_cp too.