kevinjohncutler / omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation
https://omnipose.readthedocs.io
Other
85 stars 29 forks source link

omnipose install failed #43

Closed hj1998xxxx closed 1 year ago

hj1998xxxx commented 1 year ago

Hello, I am getting the following error when I run python -m omnipose:

(omnipose) C:\Users\Administrator>python -m omnipose 100%|████████████████████████████████████████████████████████████████████████████████| 356k/356k [00:02<00:00, 143kB/s] Traceback (most recent call last): File "C:\Users\Administrator.conda\envs\omnipose\lib\runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "C:\Users\Administrator.conda\envs\omnipose\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\omnipose__main.py", line 1, in from cellpose_omni import main File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni__init.py", line 3, in from .main__ import main File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\main__.py", line 12, in from cellpose_omni.gui import gui File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\gui\gui.py", line 69, in download_url_to_file('https://github.com/kevinjohncutler/omnipose/blob/main/docs/test_files/'+file+'?raw=true', File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\utils.py", line 70, in download_url_to_file u = urlopen(url) File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 222, in urlopen return opener.open(url, data, timeout) File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 525, in open response = self._open(req, data) File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 542, in _open result = self._call_chain(self.handle_open, protocol, protocol + File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 502, in _call_chain result = func(*args) File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 1393, in https_open return self.do_open(http.client.HTTPSConnection, req, File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 1354, in do_open r = h.getresponse() File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 1347, in getresponse response.begin() File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 307, in begin version, status, reason = self._read_status() File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 268, in _read_status line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1") File "C:\Users\Administrator.conda\envs\omnipose\lib\socket.py", line 669, in readinto return self._sock.recv_into(b) File "C:\Users\Administrator.conda\envs\omnipose\lib\ssl.py", line 1241, in recv_into return self.read(nbytes, buffer) File "C:\Users\Administrator.conda\envs\omnipose\lib\ssl.py", line 1099, in read return self._sslobj.read(len, buffer) TimeoutError: [WinError 10060] Would it be possible to solve the problem? Thanks !

Additional details: Win 10 python version 3.8.5 Omnipose-0.4.4

kevinjohncutler commented 1 year ago

@hj1998xxxx Sorry for the delay. Are you still getting this error? It is probably the model downloading step, and maybe Carsen's server was down at the time.