Hello,
I am getting the following error when I run python -m omnipose:
(omnipose) C:\Users\Administrator>python -m omnipose
100%|████████████████████████████████████████████████████████████████████████████████| 356k/356k [00:02<00:00, 143kB/s]
Traceback (most recent call last):
File "C:\Users\Administrator.conda\envs\omnipose\lib\runpy.py", line 194, in _run_module_as_main
return _run_code(code, main_globals, None,
File "C:\Users\Administrator.conda\envs\omnipose\lib\runpy.py", line 87, in _run_code
exec(code, run_globals)
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\omnipose__main.py", line 1, in
from cellpose_omni import main
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni__init.py", line 3, in
from .main__ import main
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\main__.py", line 12, in
from cellpose_omni.gui import gui
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\gui\gui.py", line 69, in
download_url_to_file('https://github.com/kevinjohncutler/omnipose/blob/main/docs/test_files/'+file+'?raw=true',
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\utils.py", line 70, in download_url_to_file
u = urlopen(url)
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 525, in open
response = self._open(req, data)
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 542, in _open
result = self._call_chain(self.handle_open, protocol, protocol +
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 502, in _call_chain
result = func(*args)
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 1393, in https_open
return self.do_open(http.client.HTTPSConnection, req,
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 1354, in do_open
r = h.getresponse()
File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 1347, in getresponse
response.begin()
File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 307, in begin
version, status, reason = self._read_status()
File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 268, in _read_status
line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
File "C:\Users\Administrator.conda\envs\omnipose\lib\socket.py", line 669, in readinto
return self._sock.recv_into(b)
File "C:\Users\Administrator.conda\envs\omnipose\lib\ssl.py", line 1241, in recv_into
return self.read(nbytes, buffer)
File "C:\Users\Administrator.conda\envs\omnipose\lib\ssl.py", line 1099, in read
return self._sslobj.read(len, buffer)
TimeoutError: [WinError 10060]
Would it be possible to solve the problem?
Thanks !
Additional details:
Win 10
python version 3.8.5
Omnipose-0.4.4
@hj1998xxxx Sorry for the delay. Are you still getting this error? It is probably the model downloading step, and maybe Carsen's server was down at the time.
Hello, I am getting the following error when I run python -m omnipose:
(omnipose) C:\Users\Administrator>python -m omnipose 100%|████████████████████████████████████████████████████████████████████████████████| 356k/356k [00:02<00:00, 143kB/s] Traceback (most recent call last): File "C:\Users\Administrator.conda\envs\omnipose\lib\runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "C:\Users\Administrator.conda\envs\omnipose\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\omnipose__main.py", line 1, in
from cellpose_omni import main
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni__init.py", line 3, in
from . main__ import main
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\ main__.py", line 12, in
from cellpose_omni.gui import gui
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\gui\gui.py", line 69, in
download_url_to_file('https://github.com/kevinjohncutler/omnipose/blob/main/docs/test_files/'+file+'?raw=true',
File "C:\Users\Administrator.conda\envs\omnipose\lib\site-packages\cellpose_omni\utils.py", line 70, in download_url_to_file
u = urlopen(url)
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 525, in open
response = self._open(req, data)
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 542, in _open
result = self._call_chain(self.handle_open, protocol, protocol +
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 502, in _call_chain
result = func(*args)
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 1393, in https_open
return self.do_open(http.client.HTTPSConnection, req,
File "C:\Users\Administrator.conda\envs\omnipose\lib\urllib\request.py", line 1354, in do_open
r = h.getresponse()
File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 1347, in getresponse
response.begin()
File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 307, in begin
version, status, reason = self._read_status()
File "C:\Users\Administrator.conda\envs\omnipose\lib\http\client.py", line 268, in _read_status
line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
File "C:\Users\Administrator.conda\envs\omnipose\lib\socket.py", line 669, in readinto
return self._sock.recv_into(b)
File "C:\Users\Administrator.conda\envs\omnipose\lib\ssl.py", line 1241, in recv_into
return self.read(nbytes, buffer)
File "C:\Users\Administrator.conda\envs\omnipose\lib\ssl.py", line 1099, in read
return self._sslobj.read(len, buffer)
TimeoutError: [WinError 10060]
Would it be possible to solve the problem?
Thanks !
Additional details: Win 10 python version 3.8.5 Omnipose-0.4.4