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kevinjohncutler / omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation
https://omnipose.readthedocs.io
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GPU support for Apple silicon #77

Closed phisanti closed 2 months ago

phisanti commented 4 months ago

Hi, I have just seen that issue #63 is still open, so I would like to know if it is possible to run Omnipose with an Apple M2 Macbook. If so, is the issue with the pip environment solved (in the docs, it is stated that some of the pip packages are not updated compared with the conda packages)?

Ps, feel free to close the issue if considered duplicated

kevinjohncutler commented 2 months ago

@phisanti Very much so, I run it on my M2 all the time. The yml file I include in this repo is what I use to install it, though it has been a while since I updated that. It should work to start from that and update pytorch via pip.

kevinjohncutler commented 2 months ago

@phisanti I just updated the conda env yaml and it worked for me. I removed all the version numbers on the conda packages. Please reopen if you have any issues with it!