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kevinjohncutler / omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation
https://omnipose.readthedocs.io
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Impossible to download pre-trained models #85

Closed TAspert closed 2 months ago

TAspert commented 3 months ago

Hello,

Using the GUI, when I try segmenting an image using a pretrained model from omnipose that has to be downloaded, I get the error 500: Internal Server Error. The file is not accessible through the provided link.

[INFO] Downloading: "https://www.cellpose.org/models/bact_fluor_omnitorch_0" to C:\Users\Administrateur.cellpose\models\bact_fluor_omnitorch_0

https://www.cellpose.org/models/bact_fluor_omnitorch_0 C:\Users\Administrateur.cellpose\models\bact_fluor_omnitorch_0 ERROR: HTTP Error 500: INTERNAL SERVER ERROR

However, it works with cellpose pretrained models, e.g.: https://www.cellpose.org/models/cyto3

marieanselmet commented 2 months ago

Hello @TAspert, you can download the models manually from this repo

kevinjohncutler commented 2 months ago

@TAspert The cellpose team removed the omnipose models from their server to save space. The most recent github version of Omnipose pulls them from here, also available on the OSF as @marieanselmet linked to. I need to push a new version to pypi with this change.

kevinjohncutler commented 2 months ago

Carsen and I figured out a way to redirect the old download requests, so this issue should be solved for all prior versions including the one used for the cellprofiler plugin.