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kind-lab / mimic-profiles

FHIR profiles for MIMIC. Used for initial validation of FHIR resources generated from mimic-fhir
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mimic-profiles

FHIR profiles for MIMIC-IV. The MIMIC-IV and MIMIC-IV-ED databases have been modelled as FHIR resources. The process to generate the full implementation guide with resources is:

  1. Set up FSH and SUSHI - SUSHI Setup Guide

    • Install Node.js (needed for SUSHI): https://nodejs.org/en/
    • Check node.js is properly set up: node --version or npm --version
    • Install SUSHI: npm install -g fsh-sushi

  2. Generate FHIR resources from FSH

    • In the main directory of the repo run sushi .
    • This command will generate the FHIR resources from the FSH files

  3. Set up the IG Publisher

    • Install Jekyll (need for the IG html output)
    • Run ./_updatePublisher.sh from the top of the repository to get the latest IG Publisher
    • If _updatePublisher.sh does not work you can manually download the IG publisher

  4. Generate the mimic-fhir implementation guide

    • Run ./_genonce.shfrom the top of the repository to generate the mimic-fhir IG