issues
search
kishwarshafin
/
pepper
PEPPER-Margin-DeepVariant
MIT License
245
stars
42
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
RefCall vs. PASS
#160
yifeng-evo
closed
2 years ago
3
ImportError
#159
BrendaLee1
closed
2 years ago
1
Model training data
#158
mproberts99
closed
2 years ago
2
No valid VCF entries found!
#157
infotmatician
closed
2 years ago
4
AD field looks wierd
#156
Yijun-Tian
closed
2 years ago
5
PEPPER standalone
#155
myonaung
closed
2 years ago
2
Bump numpy from 1.21.0 to 1.22.0
#154
dependabot[bot]
closed
2 years ago
0
undefined symbol: libdeflate_free_compressor
#153
liuzhen51032
closed
2 years ago
3
Further output description
#152
nsanchezcollantes
closed
2 years ago
2
version of margin in latest docker image
#151
splaisan
closed
2 years ago
1
How to run margin in HiFi analysis?
#150
splaisan
closed
2 years ago
1
Training margin
#149
luskry
closed
2 years ago
1
Running into AttributeError
#148
sagnikbanerjee15
closed
2 years ago
3
Running PEPPER-Margin-DeepVariant pipeline on CRISPR/Cas9-mediated-enrichment nanopore data
#147
nsanchezcollantes
closed
2 years ago
9
Quick question about Deep Learning and Varian Calling
#146
ghost
closed
2 years ago
1
Is there a way to collect more information in the reported .g.vcf?
#145
RichardCorbett
closed
2 years ago
2
Running PEPPER_DEEPVARIANT pipeline on aarch64
#144
CaptainYvel
closed
2 years ago
5
PEPPER hifi model training problems
#143
jessieshen97
closed
2 years ago
8
PL issue
#142
kishwarshafin
closed
2 years ago
0
Problem with make_image module
#141
ghost
closed
2 years ago
3
Can I use deep-trio in the pepper-margin-deepvariant pipeline?
#140
jessieshen97
closed
2 years ago
3
Can PEPPER deal with CLR sequencing data?
#139
LiShuhang-gif
closed
2 years ago
2
Bump numpy from 1.16.6 to 1.21.0
#138
dependabot[bot]
closed
2 years ago
1
variants are not called by run_pepper_margin_deepvariant
#137
Josephhungyi
closed
2 years ago
9
polish_assembly deprecated? How to get two haplotype assembly files?
#136
dithiii
closed
2 years ago
2
polish with different haplotype fasta
#135
zmz1988
closed
2 years ago
7
sm_86 support in r0.7-gpu docker
#134
fellen31
closed
2 years ago
2
cannot locate bam file
#133
zhaotao1987
closed
2 years ago
5
Support for Conda / local without admin rights
#132
tuannguyen8390
closed
2 years ago
1
Stitch module error
#131
reachsagaya
closed
2 years ago
8
Specific chromosome run
#130
tahashmi
closed
2 years ago
11
Candidate detection in PEPPER-SNP
#129
GuillaumeHolley
closed
2 years ago
4
Bacteria
#128
joergFLI
closed
2 years ago
1
typo in your installation instructions
#127
rainwala
closed
2 years ago
2
Problems about “UserWarning”
#126
LiShuhang-gif
closed
2 years ago
1
Many unphased variants in amplicon data
#125
AJTDaedalus
closed
2 years ago
9
What base type does ./. （in vcffile output）indicate？
#124
lxxiaoxiaLi
closed
2 years ago
7
Training questions
#123
GuillaumeHolley
closed
2 years ago
11
Multiple bams
#122
myonaung
closed
2 years ago
1
Pepper SNP training fails on DGX1 server
#121
GuillaumeHolley
closed
2 years ago
2
Bring in updates made in DV v1.3.0
#120
SHuang-Broad
closed
2 years ago
2
Can PEPPER-Margin-DeepVariant used in nanopore RNA-seq?
#119
chilampoon
closed
2 years ago
3
r0.7 for Guppy4 data
#118
aquaskyline
closed
2 years ago
7
explanation on intermediate files
#117
myonaung
closed
2 years ago
5
error No valid VCF entries found after PEPPER SNP calling
#116
myonaung
closed
2 years ago
4
error messages for incomplete deepvariant-run on HPC.
#115
myonaung
closed
2 years ago
7
How to obtain TRUTN_BAM_H1 and TRUTH_BAM_H2.
#114
minghuaxu
closed
2 years ago
2
prefix
#113
husamia
closed
2 years ago
2
r0.6 seems stuck
#112
GuillaumeHolley
closed
2 years ago
25
If other BAMs are in output folder, `run_pepper_margin_deepvariant` fails.
#111
williamrowell
closed
2 years ago
4
Previous
Next