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kitchensjn
/
tskit_arg_visualizer
Interactive visualization method for ancestral recombination graphs
MIT License
11
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3
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Add a standalone genome bar visualization
#91
kitchensjn
opened
2 days ago
1
Loading JSON broken
#90
hyanwong
opened
1 month ago
1
Option to "download as html"
#89
hyanwong
opened
1 month ago
0
Somewhat misleading "not included parents/children" in Node View
#88
kitchensjn
opened
1 month ago
0
Add documentation for edge and node styling
#87
kitchensjn
opened
1 month ago
0
Add option to force plotting as a notebook
#86
kitchensjn
opened
1 month ago
0
Add genome bar to draw_node()
#85
hyanwong
opened
1 month ago
3
Set labels using pandas indexing
#84
hyanwong
closed
1 month ago
1
Add ability to specify degree above and below target node
#83
hyanwong
closed
1 month ago
0
draw_nodes in vs out degree.
#82
hyanwong
closed
1 month ago
0
Set labels using pandas indexing
#81
hyanwong
closed
1 month ago
0
Setting labels takes a long time for large numbers of samples
#80
hyanwong
closed
1 month ago
2
draw_nodes() overlaps samples if at different times
#79
hyanwong
opened
1 month ago
2
Make a faster edge-convert util
#78
hyanwong
closed
1 month ago
3
A trivial improvement to efficiency
#77
hyanwong
closed
1 month ago
0
Speed up _convert_nodes_table
#76
hyanwong
closed
1 month ago
0
Avoid use of ts.tables within a loop
#75
hyanwong
closed
1 month ago
5
Release a 0.0.2 version
#74
hyanwong
closed
1 month ago
1
Getting "Node not a sample and cannot be included in sample order." when re-running
#73
hyanwong
closed
1 month ago
2
Ability to add a title to the viz
#72
hyanwong
closed
1 month ago
1
Docstring needn't say "tree sequence must have marked recombination nodes"
#71
hyanwong
closed
1 month ago
1
Restrict genome coordinates
#70
hyanwong
opened
1 month ago
0
Omit unreferenced nodes from plot
#69
hyanwong
closed
1 month ago
2
Node order appears broken
#68
hyanwong
closed
2 months ago
5
Getting viz to show in Google Colab
#67
hyanwong
closed
2 months ago
5
Add SVG export function
#66
not-a-feature
closed
5 months ago
2
Assisted node positioning
#65
kitchensjn
closed
1 month ago
1
New styles structuring
#64
kitchensjn
closed
7 months ago
0
Create a pyscript version of the visualizer
#63
kitchensjn
opened
10 months ago
0
Margins issue: X-axis labels cut off in online notebooks
#62
hyanwong
closed
10 months ago
3
59 add a save as png andor svg button
#61
kitchensjn
closed
10 months ago
0
Add a save as PNG and/or SVG button
#59
kitchensjn
closed
10 months ago
2
Alternative D3ARG constructors and preparing for release
#58
kitchensjn
closed
10 months ago
0
Alternative D3ARG constructors and preparing for release
#57
kitchensjn
closed
10 months ago
1
Changing how samples are ordered and positioned
#56
kitchensjn
closed
10 months ago
0
Can't visualize a single sample
#55
kitchensjn
closed
10 months ago
0
Tag a release?
#54
hyanwong
closed
10 months ago
5
Specifying a starting order for samples
#53
hyanwong
closed
10 months ago
3
Node labels use index rather than ID
#52
hyanwong
closed
11 months ago
1
Add a time slice visualization
#51
kitchensjn
closed
2 days ago
1
Reveal information when hovering over a node
#50
hyanwong
opened
11 months ago
1
Initialise an interactive plot from a saved JSON object
#49
hyanwong
closed
10 months ago
2
Button to distribute tips evenly
#48
hyanwong
closed
10 months ago
1
Issues getting the visualiser to work in jupyterlab
#47
hyanwong
closed
11 months ago
2
Contact Jonathan Prichard re ARGS
#46
hyanwong
closed
11 months ago
6
42 mapping multiple tskit edges with the same parentchild to a single graph edge
#45
kitchensjn
closed
11 months ago
0
Add arced edges for diamonds when `edge_type="line"`
#44
kitchensjn
closed
11 months ago
1
enable different linewidths/colors for edges
#43
fbaumdicker
closed
11 months ago
2
Mapping multiple tskit edges with the same parent/child to a single graph edge
#42
hyanwong
closed
11 months ago
10
Visualising ARGs inferred from the Kreitman dataset
#41
hyanwong
closed
2 weeks ago
10
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