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klusta-team / klustaviewa

LEGACY - Graphical interface for spike sorting manual stage in Python
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Renumbering Clusters after Sorting #66

Open seacritasianman opened 7 years ago

seacritasianman commented 7 years ago

Hello,

I was wondering if there's a way to renumber all the clusters after sorting, either manually, or automatically (starting with 0 being the noise clusters to N-1 clusters). Thanks

rossant commented 7 years ago

It's not possible at the moment, unfortunately.

seacritasianman commented 7 years ago

Do you know if there's any easy way to find the cluster ID of the noise and MUA clusters after using Klustaviewa, esp via MATLAB? Thanks.

rossant commented 7 years ago

Yes, open the kwik file in MATLAB and check out the path /channel_groups/0/clusters/main/47/ (for cluster 47 of shank 0), the attribute name is cluster_group, the value is 0 or 1 for noise or MUA. See https://www.mathworks.com/help/matlab/ref/h5readatt.html?s_tid=gn_loc_drop

seacritasianman commented 7 years ago

Perfect. Thank you for your help.