KlustaViewa is a graphical interface for the manual stage of spike sorting.
NOTE: this legacy project is superseded by the phy KwikGUI that comes with the KlustaSuite.
Installing KlustaViewa may be tricky because it relies on very old dependencies (numpy 1.8, pandas 0.12, pyqt 4...).
Make sure that you have miniconda installed. You can choose the Python 3.5 64-bit version for your operating system (Linux, Windows, or OS X).
Download the environment file:
Open a terminal (on Windows, cmd
, not Powershell) in the directory where you saved the file and type:
conda install conda=3 # SKIP THIS LINE ON WINDOWS
conda env create -n klustaviewa -f environment-XXX.yml # replace `XXX` by your system
source activate klustaviewa # omit the `source` on Windows
Done! Now, to use KlustaViewa, you have to first type source activate klustaviewa
in a terminal (omit the source
on Windows), and then call klustaviewa yourfile.kwik
.
There is a user guide here but it is quite old, so some instructions refer to a previous version.
KlustaViewa is developed by Cyrille Rossant, Max Hunter, and Kenneth Harris, in the Cortexlab, University College London.