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knowledgesystems
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cmo-pipelines
GNU Affero General Public License v3.0
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add kill script for hgnc-1938 database importer
#1051
sheridancbio
closed
1 year ago
0
updates to persistence cache and kubeconfig for new EKS cluster
#1050
averyniceday
closed
1 year ago
0
add preconsumption of samples missing gene-panel
#1049
sheridancbio
closed
1 year ago
0
add hostname to crontab failure mail msg
#1048
sheridancbio
closed
1 year ago
0
Fix clear cache functions for hgnc 1938 (msk-beta)
#1047
callachennault
closed
1 year ago
0
Update scripts to import into cgds_hg1938 database
#1046
callachennault
closed
1 year ago
0
Add hgnc 19 38 import script
#1045
sheridancbio
closed
1 year ago
0
Update scripts to import into cgds_hg1938 database
#1044
callachennault
closed
1 year ago
0
Add script to import into cgds_hg1938 database
#1043
callachennault
closed
1 year ago
0
MPath Proxy Production Machines Set Up
#1042
averyniceday
opened
1 year ago
0
Unit Test Fix
#1041
averyniceday
closed
1 year ago
0
Update CDD URL -
#1040
averyniceday
closed
1 year ago
0
SMILE Connection Error Handling
#1039
averyniceday
closed
1 year ago
0
Modify merge script to ignore blank lines in subset and excluded sample list files
#1038
callachennault
closed
1 year ago
0
Modify merge script to ignore blank lines in subset and excluded sample list files
#1037
callachennault
closed
1 year ago
0
whitespace and comment fixes
#1036
sheridancbio
closed
1 year ago
0
increase the max heap size for fetchers
#1035
sheridancbio
closed
1 year ago
0
update publication guidelines link
#1034
sheridancbio
closed
1 year ago
0
Update add_clinical_attribute_metadata_headers.py
#1033
sheridancbio
closed
1 year ago
0
Stop generating DATE_ADDED attribute and remove references in scripts
#1032
callachennault
closed
1 year ago
0
Restore add-age-at-seq-report for genie and update calculation logic
#1031
callachennault
closed
1 year ago
0
test PR for circle-ci
#1030
sheridancbio
closed
1 year ago
1
reduce genie import inhibition period
#1029
sheridancbio
closed
1 year ago
0
fix genie import script
#1028
sheridancbio
closed
1 year ago
1
Add path_score column to mutation file and update germline filtering code
#1027
callachennault
closed
1 year ago
0
skip archer age at seq file during redcap backup
#1026
averyniceday
closed
1 year ago
0
Reenable delivery of part C consent status clinical attribute for AZ
#1025
callachennault
closed
1 year ago
0
Debug AstraZeneca sample missing Patient ID
#1024
callachennault
closed
1 year ago
0
update metadata headers due to CDD changest
#1023
averyniceday
closed
1 year ago
0
Integrationtests
#1022
averyniceday
closed
9 months ago
1
Fix AZ delivery script to use updated names for CNA seg data
#1021
callachennault
closed
1 year ago
0
Move age at sequencing calculation from CVR to DDP
#1020
callachennault
closed
1 year ago
0
Correctly handle no change to clinical files in changelog generation script
#1019
callachennault
closed
1 year ago
0
Add function to standardize Variant_Classification column to Unknown
#1018
callachennault
closed
1 year ago
0
Add another sample id header (SV post processed for AZ)
#1017
averyniceday
closed
1 year ago
0
Standardize SV Files
#1016
averyniceday
closed
1 year ago
0
Fix invalid NCBI_Build values in mutations files
#1015
callachennault
closed
1 year ago
0
Standardize blank values in CNA file to NA
#1014
callachennault
closed
1 year ago
0
Add Pathogenicity Score to Mutation Status
#1013
averyniceday
closed
1 year ago
0
Add Gene Panel Matrix File Standardization
#1012
averyniceday
closed
1 year ago
0
Update number of arguments passed into getAnnotatedRecordsUsingPOST call
#1011
callachennault
closed
1 year ago
1
Bump cryptography from 3.1.1 to 39.0.1 in /import-scripts
#1010
dependabot[bot]
opened
1 year ago
0
files were being sftp-ed to an incorrect place
#1009
mandawilson
closed
1 year ago
0
Fix bug in changelog test that was producing different output from changelog generation script
#1008
callachennault
closed
1 year ago
0
correct header handling in az changelog script
#1007
sheridancbio
closed
1 year ago
0
Update AZ code to check day of week on Sunday night and run Monday morning
#1006
callachennault
closed
1 year ago
0
Transfer to SFTP server using a relative filepath for the remote server
#1005
callachennault
closed
1 year ago
0
Bugfix for cache clearing
#1004
averyniceday
closed
1 year ago
0
filter germline events and all synonymous events
#1003
sheridancbio
opened
1 year ago
1
PDX Bug - Metadata Header Issue w/ Duplicating Columns
#1002
averyniceday
closed
1 year ago
2
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