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knowledgesystems
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cmo-pipelines
GNU Affero General Public License v3.0
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Updates to AZ-MSKIMPACT to integrate with CDM
#1098
callachennault
closed
8 months ago
0
skip affiliate, sclc, lymphoma imports
#1097
sheridancbio
closed
9 months ago
0
run pdx imports on a weekly basis only
#1096
sheridancbio
closed
9 months ago
0
move dmp wrapper start time to noon
#1095
sheridancbio
closed
9 months ago
0
remove references to DDP/CRDB/Darwin
#1094
averyniceday
closed
9 months ago
1
Fix syntax bug in mskimpact redcap export
#1093
callachennault
closed
9 months ago
1
Initial prototype of minio file push
#1092
callachennault
closed
8 months ago
0
CDM Infrastructure
#1091
averyniceday
opened
10 months ago
0
CDM Pipeline Testing
#1090
averyniceday
opened
10 months ago
0
CDM DAG Development
#1089
averyniceday
opened
10 months ago
0
CDM Pipeline Integration
#1088
averyniceday
closed
7 months ago
0
CDM Release
#1087
averyniceday
closed
10 months ago
0
CDM Integration
#1086
averyniceday
closed
7 months ago
0
Remove PED and timeline
#1085
averyniceday
closed
10 months ago
0
update metdata headers on integration tests
#1084
averyniceday
closed
11 months ago
0
Migrate cmo-pipelines to Java11
#1083
averyniceday
closed
11 months ago
0
Java 11 migration DDP changes
#1082
callachennault
closed
11 months ago
0
Update args to getAnnotatedRecordsUsingPOST call and gnap hash
#1081
callachennault
closed
11 months ago
0
Migrate CRDB Darwin to Java11
#1080
averyniceday
closed
7 months ago
0
Migrate Darwin/CRDB to Java11
#1079
averyniceday
closed
11 months ago
1
Update args to getAnnotatedRecordsUsingPOST call and gnap hash
#1078
callachennault
closed
11 months ago
0
Regenerate CNA seg files for Sophia cohort
#1077
callachennault
closed
11 months ago
0
Migration to MySQL 8 by Feb 29 2024
#1076
n1zea144
closed
6 months ago
0
why is there a data_timeline.txt in msk_solid_heme
#1075
n1zea144
closed
11 months ago
2
Fix bug that is preventing cna seg file from updating for az_mskimpact
#1074
callachennault
closed
11 months ago
0
Change age bucketing values to <18 and >89
#1073
callachennault
closed
11 months ago
0
Validate V2 Account (Importer/DB Connectivity)
#1072
averyniceday
closed
11 months ago
0
cvr seg data fetch retry fix
#1071
sheridancbio
closed
12 months ago
1
script changes which were deployed but not yet checked in
#1070
sheridancbio
closed
12 months ago
0
inhibit smile messages when running in test mode
#1069
sheridancbio
opened
12 months ago
0
Include annotated SV file in the annotated clinical file
#1068
zhx828
closed
1 year ago
3
Limit DDP file writing to mskimpact, mskaccess, and hemepact
#1067
callachennault
closed
1 year ago
0
Comment fixes
#1066
callachennault
closed
1 year ago
0
Write ddp files for hemepact, archer, and access
#1065
callachennault
closed
1 year ago
0
Inventory/Source MSK IMPACT Clinical Attributes
#1064
n1zea144
closed
1 year ago
0
fix missing env variable deferences in oncokb-anno
#1063
sheridancbio
closed
1 year ago
2
add/enable option : absence from master list is ignored
#1062
sheridancbio
closed
1 year ago
0
switch code to java 11 and latest cbioportal
#1061
sheridancbio
closed
1 year ago
2
Add cvr rest api timeout retry
#1060
sheridancbio
closed
12 months ago
3
use standard cookie parsing in ddp
#1059
sheridancbio
closed
1 year ago
0
increase cvr fetch memory
#1058
sheridancbio
closed
1 year ago
0
update dmp wrapper with dmp skip flag
#1057
sheridancbio
closed
1 year ago
0
add nightly automated import of cmo-access
#1056
sheridancbio
closed
1 year ago
0
Remove non signed out filtering from az script
#1055
callachennault
closed
11 months ago
2
set importUsers run duration limit to 30m
#1054
sheridancbio
closed
1 year ago
0
add ssl truststore cert and args for ddp fetch
#1053
sheridancbio
closed
1 year ago
0
move deployed annotationPipeline jar to lib directory
#1052
sheridancbio
closed
1 year ago
0
add kill script for hgnc-1938 database importer
#1051
sheridancbio
closed
1 year ago
0
updates to persistence cache and kubeconfig for new EKS cluster
#1050
averyniceday
closed
1 year ago
0
add preconsumption of samples missing gene-panel
#1049
sheridancbio
closed
1 year ago
0
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