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Got "why is this happening" in get_sample_map #20

Open Bowen0715 opened 4 months ago

Bowen0715 commented 4 months ago

Hi guys,

I've noticed the message "why is this happening" in the output log of some samples during the get_sample_map stage of SGVFinder. Here's the specific log:

Running ICRA single_file command... Running ICRA on single-end read! Single- /home/test.fq /home/test.bam already exists, skipping mapping step... this is the len of delta: 27874040 Finished running ICRA, saving results to /home/icra Running get_sample_map on /home/test.jsdel, output will be saved to /home/test.smp why is this happening

I believe this message comes from line 67 in svfinder.py. I'm unsure of the cause. Should I be concerned, or can I proceed?

Looking forward to your help. Thank you!