Problem of making report

[monicazhu]

Here is the error when I tried to make install:

... Installing openssl [2.0.3] ... FAILED Error installing package 'openssl':

• installing source package ‘openssl’ ... package ‘openssl’ successfully unpacked and MD5 sums checked using staged installation Homebrew 3.6.5 Homebrew/homebrew-core (no Git repository) Homebrew/homebrew-cask (git revision dd4462c98d; last commit 2022-10-17) Using PKG_CFLAGS=-I/usr/local/opt/openssl/include -I/usr/local/opt/openssl@1.1/include --------------------------- [ANTICONF] -------------------------------- Configuration failed because openssl was not found. Try installing:
  • deb: libssl-dev (Debian, Ubuntu, etc)
  • rpm: openssl-devel (Fedora, CentOS, RHEL)
  • csw: libssl_dev (Solaris)
  • brew: openssl (Mac OSX) If openssl is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------- [ERROR MESSAGE] --------------------------- tools/version.c:1:10: fatal error: 'openssl/opensslv.h' file not found

    include <openssl/opensslv.h>

    ^~~~~~~~ 1 error generated.

    ERROR: configuration failed for package ‘openssl’

• removing ‘/Users/monica/Desktop/info500/peer_grading/Karl_grading/renv/staging/1/openssl’ Error: install of package 'openssl' failed [error code 1] Traceback (most recent calls last): 12: renv::restore(prompt = FALSE) 11: renv_restore_run_actions(project, diff, current, lockfile, rebuild) 10: renv_install_impl(records) 9: renv_install_staged(records) 8: renv_install_default(records) 7: handler(package, renv_install_package(record)) 6: renv_install_package(record) 5: withCallingHandlers(renv_install_package_impl(record), error = function(e) { vwritef("\tFAILED") writef(e$output) }) 4: renv_install_package_impl(record) 3: r_cmd_install(package, path) 2: r_exec_error(package, output, "install", status) 1: stop(error) Execution halted make: *** [install] Error 1

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Here are the errors when I tried to synchronize my package repository

source("renv/activate.R") Error in file(filename, "r", encoding = encoding) : cannot open the connection In addition: Warning message: In file(filename, "r", encoding = encoding) : cannot open file 'renv/activate.R': No such file or directory

renv::restor() Error: 'restor' is not an exported object from 'namespace:renv'

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Here are the errors when I tried to make the report:

(base) yijingzhudeMacBook-Pro:Karl_grading monica$ make Rscript code/01_data_cleaning.R ℹ Using R 4.1.2 (lockfile was generated with R 4.2.1) Error in loadNamespace(x) : there is no package called ‘here’ Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted make: *** [output/data_clean.rds] Error 1

(base) yijingzhudeMacBook-Pro:Karl_grading monica$ make report Rscript code/01_data_cleaning.R ℹ Using R 4.1.2 (lockfile was generated with R 4.2.1) Error in loadNamespace(x) : there is no package called ‘here’ Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted make: *** [output/data_clean.rds] Error 1

(base) yijingzhudeMacBook-Pro:Karl_grading monica$ make output/data_clean.rds Rscript code/01_data_cleaning.R ℹ Using R 4.1.2 (lockfile was generated with R 4.2.1) Error in loadNamespace(x) : there is no package called ‘here’ Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted make: *** [output/data_clean.rds] Error 1

I am really confused. Please let me know if there is any problem. Thank you.

[kprotil]

I'm not sure what exactly is going on here either. The only thing I noticed is that you typed renv::restor() instead of renv::restore(). Could you try that and see if it fixes the issue?

[monicazhu]

Sure. Here is the updates:

I tried renv::restore() again. Here is still an error. -------------------------- [ERROR MESSAGE] --------------------------- tools/version.c:1:10: fatal error: 'openssl/opensslv.h' file not found

include <openssl/opensslv.h>

     ^~~~~~~~~~~~~~~~~~~~

1 error generated.

ERROR: configuration failed for package ‘openssl’

• removing ‘/Users/monica/Desktop/info500/peer_grading/Karl_grading/renv/staging/1/openssl’ Error: install of package 'openssl' failed [error code 1]

Here is the error when I tried to make the report.

(base) yijingzhudeMacBook-Pro:Karl_grading monica$ make Rscript code/01_data_cleaning.R ℹ Using R 4.1.2 (lockfile was generated with R 4.2.1) Error in loadNamespace(x) : there is no package called ‘here’ Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted make: *** [output/data_clean.rds] Error 1