This project creates a report on COVID-19 cases in Maryland. The report includes two main components: a table of average covid cases per 100,000 people for each county, and a scatterplot of hospital admissions per 100,000 people and covid cases per 100,000, with each point representing a county in Maryland.
There are two ways to build any of the figures
Run the 01_data_cleaning.R code found in the code file
make output/data_clean.rds will also create the clean dataset
Run the 02_make_table.R code found in the code file
make output/casetable.rds will also create the case table
Run the 03_make_linreg.R code found in the code file
make output/linreg.png will also create the linear regression figure
The report can be generated several ways
Knit the report.Rmd file
Run the 04_render_report.R code found in the code file
make report
There are two ways to synchronize the package repository
source("renv/activate.R") and then renv::restore() will synchronize the repository
make install will also synchronize the repository
There are two ways to build the docker image
make project_image will create the docker image
docker pull kprotil/finalproject will download the image from dockerhub
make pull image will also download the image from dockerhub
https://hub.docker.com/repository/docker/kprotil/finalproject/general
make docker-run-pc will run docker automatically and create the report in the "report" folder, if you are on a pc
make docker-run-mac will run docker automatically and create the report in the "report" folder, if you are on a mac