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kreft
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iDynoMiCS
Individual-based Dynamics of Microbial Communities Simulator
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Update branch bas
#80
bascee
closed
2 years ago
2
Update branch bas
#79
bascee
closed
2 years ago
0
Merging iDyno 1.5 updates into main repository
#78
bascee
closed
2 years ago
0
Upgraded to jQuery 3.5.1 after warning from Github regarding security…
#77
Secondus2
closed
4 years ago
1
Is there any method to calculate biofilm surface coverage as a function of time by using iDynoMiCS?
#76
soulmm
closed
7 years ago
0
number of iterations
#75
nadaa
closed
7 years ago
2
Errors in in v1.3
#74
nadaa
closed
8 years ago
10
added console output to frame option
#73
bascee
closed
9 years ago
1
added python script for updating the color dictionary reference figur…
#72
roughhawkbit
closed
9 years ago
0
changed 3D example protocol file to show off new, faster plotting
#71
roughhawkbit
closed
9 years ago
0
Preparation for iDyno course in Copenhagen
#70
roughhawkbit
closed
9 years ago
0
Standalone ODE solver and Python scripts
#69
roughhawkbit
closed
9 years ago
0
Bug fixes
#68
bascee
closed
9 years ago
0
N-dimensional arrays, basic ODE solver standalone, Voronoi diagram maker progress
#67
roughhawkbit
closed
9 years ago
0
Bug fixes
#66
bascee
closed
9 years ago
0
advance in Voronoi, started work on N-dimensional array, and fixed bug in Simulator
#65
roughhawkbit
closed
9 years ago
0
boundaryLayer in env_State output
#64
roughhawkbit
closed
9 years ago
0
fixed bug where LocatedGroup.erosionTime exactly zero
#63
roughhawkbit
closed
9 years ago
0
Fixed bulk pulse bug
#62
roughhawkbit
closed
9 years ago
0
Removed warning messages for absent values in protocol files
#61
roughhawkbit
closed
9 years ago
0
Major tidying and preliminary work on Voronoi diagram generator
#60
roughhawkbit
closed
9 years ago
0
Cyclic boundaries assumed when calculating Boundary Layer
#59
roughhawkbit
opened
9 years ago
0
Dealing with padding
#58
roughhawkbit
opened
9 years ago
2
Cleanup
#57
Madolph
closed
9 years ago
0
Tidying up
#56
roughhawkbit
closed
9 years ago
0
Merge pull request #1 from kreft/master
#55
roughhawkbit
closed
10 years ago
0
Fix SimpleInhibition
#54
fophillips
closed
10 years ago
0
Genealogy integer overflow
#53
fophillips
opened
10 years ago
1
A number of small code refactors
#52
fophillips
closed
10 years ago
2
Merge pull request #45 from roughhawkbit/master
#51
roughhawkbit
closed
10 years ago
0
Tidying up
#50
roughhawkbit
closed
10 years ago
0
EpiBacEnv.StressEffect() random numbers
#49
roughhawkbit
opened
10 years ago
1
ReactionGrowthFitness.computeMassGrowthRate(ActiveAgent anAgent)
#48
roughhawkbit
opened
10 years ago
0
OS Dependency Error in RunIDyno.py
#47
kalden
closed
10 years ago
1
Per-species relative diffusivity
#46
fophillips
opened
10 years ago
2
Random seed not specified in protocol
#45
roughhawkbit
closed
10 years ago
0
Declaring Species by Area & Length rather than Number
#44
kalden
closed
10 years ago
1
Specifying Species By Number Per MM3 rather than a set number
#43
kalden
closed
10 years ago
1
Initialising Double[] arrays
#42
roughhawkbit
closed
10 years ago
0
Changes to ContinuousVector required for eGUT epithelium. 1. Now
#41
kalden
closed
10 years ago
1
Define cell initiation by density rather than number
#40
roughhawkbit
closed
10 years ago
2
Fix XML syntax error in env_Sum file
#39
fophillips
closed
10 years ago
0
Warning message if array empty
#38
roughhawkbit
closed
10 years ago
0
Utils.ExtraMath cleaned up
#37
roughhawkbit
closed
10 years ago
2
Why is shoveOnly always set to true when calling shoveAllLocated
#36
fophillips
opened
10 years ago
0
Bugfix: New speciesDefault XMLParser error
#35
fophillips
closed
10 years ago
1
Single species example no longer works.
#34
fophillips
closed
11 years ago
1
SoluteGrid/SpatialGrid in Domain
#33
roughhawkbit
opened
11 years ago
1
LocatedAgent.interact() in need of rewriting
#32
roughhawkbit
opened
11 years ago
2
Added the ability to have species 'defaults' - thus we can now specify
#31
kalden
closed
11 years ago
0
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