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krishnanlab
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obnb
A Python toolkit for setting up benchmarking dataset using biomedical networks
https://obnb.readthedocs.io
MIT License
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create term hold-out scenario.
#498
kmanpearl
opened
1 month ago
1
HPO creates empty label set collection
#497
kmanpearl
opened
1 month ago
0
OboTermIncompleteError when processing mondo in specific directory
#496
kmanpearl
opened
2 months ago
2
multiple connected components in mondo ontology
#495
kmanpearl
opened
2 months ago
0
build(deps): bump pandas from 2.0.3 to 2.2.1
#494
dependabot[bot]
opened
7 months ago
0
build(deps): bump numpy from 1.23.3 to 1.26.4
#493
dependabot[bot]
opened
8 months ago
0
build(deps): bump sphinx-autodoc-typehints from 1.23.0 to 2.0.0
#492
dependabot[bot]
opened
8 months ago
0
build(deps): bump sphinx-autodoc-typehints from 1.23.0 to 1.25.3
#491
dependabot[bot]
closed
8 months ago
1
build(deps): bump pandas from 2.0.3 to 2.2.0
#490
dependabot[bot]
closed
7 months ago
1
build(deps): bump numpy from 1.23.3 to 1.26.3
#489
dependabot[bot]
closed
8 months ago
1
[pre-commit.ci] pre-commit autoupdate
#488
pre-commit-ci[bot]
opened
10 months ago
0
build(deps): bump pandas from 2.0.3 to 2.1.4
#487
dependabot[bot]
closed
9 months ago
1
Option to fall back to downloading from `latest` if `current` or the version provided is not available.
#486
RemyLau
opened
10 months ago
0
Archive more adata options
#485
RemyLau
opened
10 months ago
0
build(deps): bump pandas from 2.0.3 to 2.1.3
#484
dependabot[bot]
closed
10 months ago
1
Remove obselete terms in ontologies (filtering)
#483
RemyLau
opened
10 months ago
0
[pre-commit.ci] pre-commit autoupdate
#482
pre-commit-ci[bot]
closed
10 months ago
0
build(deps): bump sphinx-autodoc-typehints from 1.23.0 to 1.25.2
#481
dependabot[bot]
closed
8 months ago
1
build(deps): bump numpy from 1.23.3 to 1.26.2
#480
dependabot[bot]
closed
9 months ago
1
build(deps): update matplotlib requirement from <3.8 to <3.9
#479
dependabot[bot]
closed
10 months ago
1
build(deps): bump sphinx-autodoc-typehints from 1.23.0 to 1.24.1
#478
dependabot[bot]
closed
11 months ago
1
build(deps): bump scikit-learn from 1.3.0 to 1.3.2
#477
dependabot[bot]
closed
11 months ago
1
[pre-commit.ci] pre-commit autoupdate
#476
pre-commit-ci[bot]
closed
11 months ago
0
build(deps): bump scikit-learn from 1.3.0 to 1.3.1
#475
dependabot[bot]
closed
11 months ago
1
feat: node feature transformations with dataset interface
#474
RemyLau
closed
1 year ago
0
build(deps): bump numpy from 1.23.3 to 1.26.1
#473
dependabot[bot]
closed
11 months ago
1
build(deps): bump numpy from 1.23.3 to 1.26.0
#472
dependabot[bot]
closed
1 year ago
1
build(deps): bump sphinx from 6.2.1 to 7.2.6
#471
dependabot[bot]
opened
1 year ago
0
build(deps): bump scanpy from 1.9.3 to 1.9.5
#470
dependabot[bot]
closed
1 year ago
1
build(deps): bump sphinx from 6.2.1 to 7.2.5
#469
dependabot[bot]
closed
1 year ago
1
[pre-commit.ci] pre-commit autoupdate
#468
pre-commit-ci[bot]
closed
1 year ago
0
build(deps): bump sphinx from 6.2.1 to 7.2.4
#467
dependabot[bot]
closed
1 year ago
1
build(deps): bump scanpy from 1.9.3 to 1.9.4
#466
dependabot[bot]
closed
1 year ago
1
build(deps): bump sphinx from 6.2.1 to 7.2.3
#465
dependabot[bot]
closed
1 year ago
1
build(deps): bump sphinx from 6.2.1 to 7.2.2
#464
dependabot[bot]
closed
1 year ago
1
Add option for `weighted` to be inferred (SparseGraph from npz, etc.)
#463
RemyLau
opened
1 year ago
0
Potentially issue when saving directed edge list (compact..)
#462
RemyLau
opened
1 year ago
0
build(deps): bump tqdm from 4.65.0 to 4.66.1
#461
dependabot[bot]
closed
1 year ago
1
build(deps): bump sphinx from 6.2.1 to 7.1.2
#460
dependabot[bot]
closed
1 year ago
1
build(deps): bump numpy from 1.23.3 to 1.25.2
#459
dependabot[bot]
closed
1 year ago
1
feat: attnwalk embedding extension
#458
RemyLau
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#457
pre-commit-ci[bot]
closed
1 year ago
0
build(deps): bump sphinx from 6.2.1 to 7.1.1
#456
dependabot[bot]
closed
1 year ago
1
build(deps): bump pyyaml from 6.0 to 6.0.1
#455
dependabot[bot]
closed
1 year ago
0
build(deps): bump sphinx-autodoc-typehints from 1.23.0 to 1.24.0
#454
dependabot[bot]
closed
11 months ago
1
[pre-commit.ci] pre-commit autoupdate
#453
pre-commit-ci[bot]
closed
1 year ago
0
minor fixes to notebook and readme
#452
RemyLau
closed
1 year ago
0
create basic tutorial notebook
#451
RemyLau
closed
1 year ago
0
build(deps): bump scikit-learn from 1.2.2 to 1.3.0
#450
dependabot[bot]
closed
1 year ago
1
build(deps): bump numpy from 1.23.3 to 1.25.1
#449
dependabot[bot]
closed
1 year ago
1
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