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krishnanlab
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obnb
A Python toolkit for setting up benchmarking dataset using biomedical networks
https://obnb.readthedocs.io
MIT License
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[pre-commit.ci] pre-commit autoupdate
#448
pre-commit-ci[bot]
closed
1 year ago
0
build(deps): bump sphinx-autodoc-typehints from 1.23.0 to 1.23.3
#447
dependabot[bot]
closed
1 year ago
1
build(deps): bump pandas from 2.0.2 to 2.0.3
#446
dependabot[bot]
closed
1 year ago
1
[pre-commit.ci] pre-commit autoupdate
#445
pre-commit-ci[bot]
closed
1 year ago
0
build(deps): bump pyroe from 0.9.0 to 0.9.3
#444
dependabot[bot]
opened
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#443
pre-commit-ci[bot]
closed
1 year ago
0
build(deps): bump numpy from 1.23.3 to 1.25.0
#442
dependabot[bot]
closed
1 year ago
1
fix: skip version checking for dev
#441
RemyLau
closed
1 year ago
0
build(deps): bump sphinx-autodoc-typehints from 1.23.0 to 1.23.2
#440
dependabot[bot]
closed
1 year ago
1
update readme; add data version utils
#439
RemyLau
closed
1 year ago
0
build(deps): bump sphinx-autodoc-typehints from 1.23.0 to 1.23.1
#438
dependabot[bot]
closed
1 year ago
1
release `obnbdata-0.1.0`; use `oudated` to check version
#437
RemyLau
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#436
pre-commit-ci[bot]
closed
1 year ago
0
create PyG and DGL examples
#435
RemyLau
closed
1 year ago
0
turn default constructor into OpenBiomedNetBench object
#434
RemyLau
closed
1 year ago
0
add sphinx build doc test
#433
RemyLau
closed
1 year ago
0
feat: auto feature generation in dataset object; degree functions for graph objects
#432
RemyLau
closed
1 year ago
0
build(deps): bump sphinx from 6.2.1 to 7.0.1
#431
dependabot[bot]
closed
1 year ago
2
update doc configs
#430
RemyLau
closed
1 year ago
0
feat: create DGL dataset object
#429
RemyLau
closed
1 year ago
0
set apop and auroc metrics for trainer by default
#428
RemyLau
closed
1 year ago
0
update links and data versions
#427
RemyLau
closed
1 year ago
0
minor fix: bump2vec version
#426
RemyLau
closed
1 year ago
0
build(deps): bump sphinx-rtd-theme from 1.2.1 to 1.2.2
#425
dependabot[bot]
closed
1 year ago
0
updating to `obnb`
#424
RemyLau
closed
1 year ago
0
add node_ids and task_ids to pyg data object
#423
RemyLau
closed
1 year ago
0
fix: pass log_level to internal processes
#422
RemyLau
closed
1 year ago
0
feat: pyt dataset object
#421
RemyLau
closed
1 year ago
0
build(deps): bump sphinx-rtd-theme from 1.2.0 to 1.2.1
#420
dependabot[bot]
closed
1 year ago
1
build(deps): bump pandas from 2.0.0 to 2.0.2
#419
dependabot[bot]
closed
1 year ago
1
build(deps): bump sphinx from 6.1.3 to 7.0.1
#418
dependabot[bot]
closed
1 year ago
1
build(deps): bump requests from 2.28.2 to 2.31.0
#417
dependabot[bot]
closed
1 year ago
1
feat: orbital feature extraction extension module
#416
RemyLau
closed
1 year ago
0
build(deps): bump pyroe from 0.9.0 to 0.9.2
#415
dependabot[bot]
closed
1 year ago
1
build(deps): bump numpy from 1.23.3 to 1.24.3
#414
dependabot[bot]
closed
1 year ago
1
build(deps): bump class-resolver from 0.4.1 to 0.4.2
#413
dependabot[bot]
closed
1 year ago
1
build(deps): bump sphinx-autodoc-typehints from 1.22 to 1.23.0
#412
dependabot[bot]
closed
1 year ago
1
build(deps): bump ndex2 from 3.5.0 to 3.5.1
#411
dependabot[bot]
closed
1 year ago
1
build(deps): bump pyroe from 0.9.0 to 0.9.1
#410
dependabot[bot]
closed
1 year ago
1
Combine `.get_y` and `.split`; consolidate supervised and gnn trainers regarding handling of negatives
#409
RemyLau
opened
1 year ago
1
feat: use `y_mask` to enable considering selected negatives for training
#408
RemyLau
closed
1 year ago
0
build(deps): bump class-resolver from 0.4.0 to 0.4.1
#407
dependabot[bot]
closed
1 year ago
0
build(deps): bump pandas from 1.5.3 to 2.0.0
#406
dependabot[bot]
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#405
pre-commit-ci[bot]
closed
1 year ago
0
feat: implement `to_undirected_sparse_graph` method for directed sparse graph
#404
RemyLau
closed
1 year ago
0
update install script (pytorch 2.0, pyg 2.3)
#403
RemyLau
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#402
pre-commit-ci[bot]
closed
1 year ago
0
build(deps): update matplotlib requirement from <3.7 to <3.8
#401
dependabot[bot]
closed
1 year ago
1
release nledata-v0.1.0-dev6 data; update url and stats
#400
RemyLau
closed
1 year ago
0
make release data stats report
#399
RemyLau
closed
1 year ago
0
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