Siberian rubythroat pressure analysis

LOGGER TYPE: CAnMove multi-sensor loggers (developed by CAnMove lab from Biology department, Lund University)

DATA TYPE:

• Barometric data and temperature data (per hour, Aug 15 - Nov 20, 2021, Mar 15 - May 20, 2022)
• Accelerometric data (per hour, Aug 15, 2021 - May 20, 2022)
• Light-level data (per 5 min, Dec 21 - 31, 2021)

SPECIES: Siberian rubythroat (Calliope calliope)

LOCATIONS: 1. Datong county, Qinghai, China; 2. Mirnoye, Russia

PERIOD: 2021 (deployment) to 2022 (re-collection)

DESCRIPTION:

before analysis, open the "preparation" script and load all the libraries

All Qinghai data should be able to run from 99-combined, and simply change the gdl <- "LOGGERNAME"

Prior to the analysis, a quick Visualizing of final results (pressure, static and wind) can be run; if not finishing the analysis, you won't have anything to load here, just skip

If you run independent R files by steps, in 1-Pressure please run from beginning to enable to trainset_read() function, as it requires a pre-defined pam file and a .csv file for the logger you are running the analysis

PLEASE beaware that 56C dataset only contains autumn data, and it no longer has the winter gap of pressure. Thus, in 5-2_windgraph_create section, please unmask those that labels with "56C only" and not run those

For new data:

1. copy pressure, temperature, actoscore (sum and independent) into one sheet

2. a new csv file, adapting the pressure, temp, actoscore into the trainset format - timestamp use excel format to YYYY-MM-DD"T"HH:MM:SS".000Z

3. use trainset website to process

4. put a copy of the csv file in 0_PAM folder

5. use the code to transform it to be readable, write_trainset()

6. manually copy the label (change them from label_1 to "1") to the auto-generated file, rename as "xx-labeled"

7. read_trainset and continue