issues
search
kundajelab
/
genomelake
Simple and efficient access to genomic data for deep learning models.
BSD 3-Clause "New" or "Revised" License
43
stars
17
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
TileDB backend crashes after using up all of RAM in Colab environment
#23
DebadityaPal
opened
3 years ago
0
JUND HepG2 data for all chromosomes
#22
berkuva
opened
4 years ago
0
Add support for Python 3.7
#21
mmtrebuchet
opened
5 years ago
6
Invalid Base Issue
#20
mmingay2
closed
5 years ago
1
migrated from pysam to pyfaidx
#19
Avsecz
opened
6 years ago
2
Migrate from pysam to pyfaidx
#18
Avsecz
opened
6 years ago
2
Open the bigwig file only once
#17
Avsecz
closed
6 years ago
8
Add TileDB backend (#1)
#16
chrisprobert
closed
6 years ago
1
Speed of genomelake vs. pyfasta for DNA sequence loading
#15
AvantiShri
closed
6 years ago
8
ImportError: No module named util
#14
AvantiShri
closed
6 years ago
4
The README mixes tabs and spaces
#13
daquang
closed
6 years ago
1
Handle ambiguous letters other than N/n, allowed by IUPAC conventions.
#12
manyu90
opened
6 years ago
22
bigwig tests
#11
jisraeli
closed
6 years ago
2
test ArrayExtractor on fasta
#10
jisraeli
closed
6 years ago
2
Coveralls and status badges
#9
jisraeli
closed
6 years ago
0
FastaExtractor tests and CI
#8
jisraeli
closed
6 years ago
0
fix BigwigExtractor import
#7
Avsecz
closed
6 years ago
0
BigwigExtractor error
#6
Avsecz
closed
6 years ago
2
keep fasta in memory
#5
jorenretel
closed
6 years ago
1
readme enable python code highlighting
#4
Avsecz
closed
6 years ago
0
install cython and parse README in setup.py
#3
jisraeli
closed
6 years ago
0
stranded fasta extraction
#2
jisraeli
closed
6 years ago
0
Python3 support
#1
jisraeli
closed
6 years ago
0