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kushalkolar / MESmerize

Platform for Calcium Imaging analysis. DEPRECATED.
GNU General Public License v3.0
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ModuleNotFoundError: No module named 'caiman' #47

Closed kevinpan0127 closed 3 years ago

kevinpan0127 commented 3 years ago

Operating System & specs (CPU, RAM etc.)

Windows, Intel Core i7, 16GB RAM

Details about your Mesmerize install

Followed installation on the mesmerize document page for windows.

Describe the issue, please be as explicit and detailed as possible.

I am trying to run motion correction with my own data. I am following the video tutorial but when I start to run the batch for motion correction, I get the following error:

File "c:\users\panyi\anaconda3\envs\mesmerize\lib\site-packages\mesmerize\viewer\modules\batch_run_modules\caiman_motion_correction.py", line 23, in import caiman as cm ModuleNotFoundError: No module named 'caiman'

Is there a way to solve this issue? I have successfully installed the caiman manager using "caimanmanager.py install", but the caiman_data file is showing under the path "C:\Users\panyi". Is this an issue?

kushalkolar commented 3 years ago

What happens when you run import caiman in ipython ?

What do your system configuration settings look like (screenshot) , see the note in the blue box at the end of the installation steps: http://docs.mesmerizelab.org/en/master/user_guides/installation.html#windows

kevinpan0127 commented 3 years ago

Thank you for the quick reply! I have uncommented the # conda activate mesmerize and it now works!

kushalkolar commented 3 years ago

glad that it works!