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kushalkolar / MESmerize

Platform for Calcium Imaging analysis. DEPRECATED.
GNU General Public License v3.0
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OSX install failure, psutil #49

Closed ASiliciano closed 3 years ago

ASiliciano commented 3 years ago

I'm following the installation instructions given here (completed steps 1-3): http://docs.mesmerizelab.org/en/master/user_guides/installation.html When I try to download mesmerize via pip, it fails at Building wheels for collected packages: psutil

System information

  1. OS (ex. Windows 10, Mac OSX Mojave, Ubuntu 20.04 LTS) -- MacOS Big Sur
  2. CPU (ex. Intel i7 9700k, AMD Ryzen 3950x) -- 2.4 GHz Quad-Core Intel Core i5
  3. RAM -- 8 GB 2133 MHz LPDDR3
  4. Do you have an SSD or magnetic HDD -- SSD
(base) andrews-mbp-2:~ andrewsiliciano$ source activate mesmerize
(mesmerize) andrews-mbp-2:~ andrewsiliciano$ pip install mesmerize
Collecting mesmerize
  Using cached mesmerize-0.4.1-py3-none-any.whl (1.2 MB)
Requirement already satisfied: QtPy>=1.6.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.9.0)
Requirement already satisfied: holoviews in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.14.1)
Requirement already satisfied: Pillow>=5.4.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (8.0.1)
Requirement already satisfied: python-dateutil>=2.8.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (2.8.1)
Requirement already satisfied: ipykernel>=4.10 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (5.4.2)
Requirement already satisfied: MarkupSafe>=1.1.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.1.1)
Requirement already satisfied: ipython>=7.15.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (7.16.1)
Requirement already satisfied: future>=0.18.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.18.2)
Requirement already satisfied: PyQt5<=5.12,>=5.9.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (5.12)
Requirement already satisfied: scipy>=1.2.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.5.3)
Requirement already satisfied: joblib>=0.15.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.0.0)
Requirement already satisfied: tqdm>=4.37.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (4.55.0)
Requirement already satisfied: PeakUtils in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.3.3)
Requirement already satisfied: cycler==0.10.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.10.0)
Requirement already satisfied: tifffile in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.15.1)
Requirement already satisfied: pandas~=0.25.3 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.25.3)
Requirement already satisfied: dask>=1.1.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (2020.12.0)
Requirement already satisfied: pyqtgraph in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.11.1)
Requirement already satisfied: pynwb in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.4.0)
Requirement already satisfied: scikit-image~=0.15.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.15.0)
Requirement already satisfied: h5py~=2.10.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (2.10.0)
Requirement already satisfied: scikit-learn>=0.20.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.24.0)
Requirement already satisfied: bokeh>=2.2.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (2.2.3)
Requirement already satisfied: ipyparallel>=6.3 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (6.3.0)
Requirement already satisfied: matplotlib<=3.2.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (3.2.1)
Requirement already satisfied: six in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from cycler==0.10.0->mesmerize) (1.15.0)
Collecting seaborn==0.9.0
  Using cached seaborn-0.9.0-py3-none-any.whl (208 kB)
Requirement already satisfied: numpy>=1.9.3 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from seaborn==0.9.0->mesmerize) (1.19.4)
Collecting spyder==3.3.3
  Using cached spyder-3.3.3-py3-none-any.whl (2.8 MB)
Requirement already satisfied: numpydoc in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (1.1.0)
Requirement already satisfied: spyder-kernels<1.0,>=0.4.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (0.5.2)
Requirement already satisfied: qtconsole>=4.2.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (5.0.1)
Requirement already satisfied: pyzmq in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (20.0.0)
Requirement already satisfied: rope>=0.10.5 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (0.18.0)
Requirement already satisfied: pylint in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (2.6.0)
Requirement already satisfied: qtawesome>=0.4.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (1.0.2)
Requirement already satisfied: pyflakes in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (2.2.0)
Requirement already satisfied: pycodestyle in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (2.6.0)
Requirement already satisfied: sphinx in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (3.4.1)
Requirement already satisfied: pickleshare in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (0.7.5)
Requirement already satisfied: pygments>=2.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (2.7.3)
Requirement already satisfied: nbconvert in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (6.0.7)
Requirement already satisfied: keyring in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (21.8.0)
Requirement already satisfied: jedi>=0.9.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (0.17.2)
Requirement already satisfied: cloudpickle in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (1.6.0)
Requirement already satisfied: chardet>=2.0.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder==3.3.3->mesmerize) (4.0.0)
Requirement already satisfied: packaging>=16.8 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from bokeh>=2.2.0->mesmerize) (20.8)
Requirement already satisfied: tornado>=5.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from bokeh>=2.2.0->mesmerize) (6.1)
Requirement already satisfied: PyYAML>=3.10 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from bokeh>=2.2.0->mesmerize) (5.3.1)
Requirement already satisfied: typing-extensions>=3.7.4 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from bokeh>=2.2.0->mesmerize) (3.7.4.3)
Requirement already satisfied: Jinja2>=2.7 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from bokeh>=2.2.0->mesmerize) (2.11.2)
Collecting graphviz>=0.13
  Using cached graphviz-0.16-py2.py3-none-any.whl (19 kB)
Requirement already satisfied: jupyter-client in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipykernel>=4.10->mesmerize) (6.1.7)
Requirement already satisfied: traitlets>=4.1.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipykernel>=4.10->mesmerize) (4.3.3)
Requirement already satisfied: appnope in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipykernel>=4.10->mesmerize) (0.1.2)
Requirement already satisfied: decorator in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipyparallel>=6.3->mesmerize) (4.4.2)
Requirement already satisfied: ipython-genutils in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipyparallel>=6.3->mesmerize) (0.2.0)
Requirement already satisfied: setuptools>=18.5 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipython>=7.15.0->mesmerize) (51.0.0.post20201207)
Requirement already satisfied: pexpect in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipython>=7.15.0->mesmerize) (4.8.0)
Requirement already satisfied: backcall in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipython>=7.15.0->mesmerize) (0.2.0)
Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipython>=7.15.0->mesmerize) (3.0.8)
Requirement already satisfied: parso<0.8.0,>=0.7.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from jedi>=0.9.0->spyder==3.3.3->mesmerize) (0.7.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from matplotlib<=3.2.1->mesmerize) (1.3.1)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from matplotlib<=3.2.1->mesmerize) (2.4.7)
Collecting numba>=0.50.0
  Using cached numba-0.52.0-cp36-cp36m-macosx_10_14_x86_64.whl (2.2 MB)
Collecting llvmlite<0.36,>=0.35.0
  Using cached llvmlite-0.35.0-cp36-cp36m-macosx_10_9_x86_64.whl (18.5 MB)
Collecting opencv-contrib-python>=4.2
  Downloading opencv_contrib_python-4.5.1.48-cp36-cp36m-macosx_10_13_x86_64.whl (51.3 MB)
     |████████████████████████████████| 51.3 MB 6.0 MB/s 
Collecting opencv-python>=4.2
  Downloading opencv_python-4.5.1.48-cp36-cp36m-macosx_10_13_x86_64.whl (40.3 MB)
     |████████████████████████████████| 40.3 MB 7.0 MB/s 
Requirement already satisfied: pytz>=2017.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from pandas~=0.25.3->mesmerize) (2020.5)
Requirement already satisfied: wcwidth in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython>=7.15.0->mesmerize) (0.2.5)
Collecting psutil~=5.7.0
  Using cached psutil-5.7.3.tar.gz (465 kB)
Requirement already satisfied: PyQt5_sip<4.20,>=4.19.14 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from PyQt5<=5.12,>=5.9.2->mesmerize) (4.19.18)
Requirement already satisfied: jupyter-core in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from qtconsole>=4.2.0->spyder==3.3.3->mesmerize) (4.7.0)
Requirement already satisfied: imageio>=2.0.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from scikit-image~=0.15.0->mesmerize) (2.9.0)
Requirement already satisfied: PyWavelets>=0.4.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from scikit-image~=0.15.0->mesmerize) (1.1.1)
Requirement already satisfied: networkx>=2.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from scikit-image~=0.15.0->mesmerize) (2.5)
Requirement already satisfied: threadpoolctl>=2.0.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from scikit-learn>=0.20.2->mesmerize) (2.1.0)
Requirement already satisfied: wurlitzer in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from spyder-kernels<1.0,>=0.4.2->spyder==3.3.3->mesmerize) (2.0.1)
Collecting tables>=3.6.1
  Using cached tables-3.6.1-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (4.4 MB)
Collecting numexpr>=2.6.2
  Using cached numexpr-2.7.2-cp36-cp36m-macosx_10_9_x86_64.whl (101 kB)
Requirement already satisfied: pyviz-comms>=0.7.3 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from holoviews->mesmerize) (2.0.1)
Requirement already satisfied: panel>=0.8.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from holoviews->mesmerize) (0.10.2)
Requirement already satisfied: param<2.0,>=1.9.3 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from holoviews->mesmerize) (1.10.0)
Requirement already satisfied: colorcet in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from holoviews->mesmerize) (2.0.2)
Requirement already satisfied: pyct>=0.4.4 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from panel>=0.8.0->holoviews->mesmerize) (0.4.8)
Requirement already satisfied: markdown in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from panel>=0.8.0->holoviews->mesmerize) (3.3.3)
Requirement already satisfied: requests in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from panel>=0.8.0->holoviews->mesmerize) (2.25.1)
Collecting jupyter
  Using cached jupyter-1.0.0-py2.py3-none-any.whl (2.7 kB)
Requirement already satisfied: ipywidgets in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from jupyter->mesmerize) (7.6.2)
Requirement already satisfied: jupyter-console in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from jupyter->mesmerize) (6.2.0)
Requirement already satisfied: notebook in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from jupyter->mesmerize) (6.1.6)
Requirement already satisfied: nbformat>=4.2.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipywidgets->jupyter->mesmerize) (5.0.8)
Requirement already satisfied: widgetsnbextension~=3.5.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipywidgets->jupyter->mesmerize) (3.5.1)
Requirement already satisfied: jupyterlab-widgets>=1.0.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ipywidgets->jupyter->mesmerize) (1.0.0)
Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbformat>=4.2.0->ipywidgets->jupyter->mesmerize) (3.2.0)
Requirement already satisfied: attrs>=17.4.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets->jupyter->mesmerize) (20.3.0)
Requirement already satisfied: pyrsistent>=0.14.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets->jupyter->mesmerize) (0.17.3)
Requirement already satisfied: importlib-metadata in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets->jupyter->mesmerize) (3.3.0)
Requirement already satisfied: prometheus-client in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from notebook->jupyter->mesmerize) (0.9.0)
Requirement already satisfied: Send2Trash in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from notebook->jupyter->mesmerize) (1.5.0)
Requirement already satisfied: argon2-cffi in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from notebook->jupyter->mesmerize) (20.1.0)
Requirement already satisfied: terminado>=0.8.3 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from notebook->jupyter->mesmerize) (0.9.1)
Requirement already satisfied: ptyprocess in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from terminado>=0.8.3->notebook->jupyter->mesmerize) (0.7.0)
Requirement already satisfied: cffi>=1.0.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from argon2-cffi->notebook->jupyter->mesmerize) (1.14.4)
Requirement already satisfied: pycparser in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from cffi>=1.0.0->argon2-cffi->notebook->jupyter->mesmerize) (2.20)
Requirement already satisfied: zipp>=0.5 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from importlib-metadata->jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets->jupyter->mesmerize) (3.4.0)
Requirement already satisfied: mistune<2,>=0.8.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbconvert->spyder==3.3.3->mesmerize) (0.8.4)
Requirement already satisfied: bleach in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbconvert->spyder==3.3.3->mesmerize) (3.2.1)
Requirement already satisfied: pandocfilters>=1.4.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbconvert->spyder==3.3.3->mesmerize) (1.4.3)
Requirement already satisfied: nbclient<0.6.0,>=0.5.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbconvert->spyder==3.3.3->mesmerize) (0.5.1)
Requirement already satisfied: jupyterlab-pygments in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbconvert->spyder==3.3.3->mesmerize) (0.1.2)
Requirement already satisfied: defusedxml in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbconvert->spyder==3.3.3->mesmerize) (0.6.0)
Requirement already satisfied: entrypoints>=0.2.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbconvert->spyder==3.3.3->mesmerize) (0.3)
Requirement already satisfied: testpath in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbconvert->spyder==3.3.3->mesmerize) (0.4.4)
Requirement already satisfied: nest-asyncio in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbclient<0.6.0,>=0.5.0->nbconvert->spyder==3.3.3->mesmerize) (1.4.3)
Requirement already satisfied: async-generator in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from nbclient<0.6.0,>=0.5.0->nbconvert->spyder==3.3.3->mesmerize) (1.10)
Requirement already satisfied: webencodings in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from bleach->nbconvert->spyder==3.3.3->mesmerize) (0.5.1)
Requirement already satisfied: imagesize in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (1.2.0)
Requirement already satisfied: docutils>=0.12 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (0.16)
Requirement already satisfied: babel>=1.3 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (2.9.0)
Requirement already satisfied: sphinxcontrib-jsmath in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (1.0.1)
Requirement already satisfied: sphinxcontrib-htmlhelp in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (1.0.3)
Requirement already satisfied: snowballstemmer>=1.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (2.0.0)
Requirement already satisfied: sphinxcontrib-serializinghtml in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (1.1.4)
Requirement already satisfied: alabaster<0.8,>=0.7 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (0.7.12)
Requirement already satisfied: sphinxcontrib-qthelp in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (1.0.3)
Requirement already satisfied: sphinxcontrib-devhelp in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (1.0.2)
Requirement already satisfied: sphinxcontrib-applehelp in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from sphinx->spyder==3.3.3->mesmerize) (1.0.2)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from requests->panel>=0.8.0->holoviews->mesmerize) (1.26.2)
Requirement already satisfied: certifi>=2017.4.17 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from requests->panel>=0.8.0->holoviews->mesmerize) (2020.12.5)
Requirement already satisfied: idna<3,>=2.5 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from requests->panel>=0.8.0->holoviews->mesmerize) (2.10)
Collecting nuset-lib
  Using cached nuset_lib-0.1.1-py3-none-any.whl (196 kB)
Requirement already satisfied: mccabe<0.7,>=0.6 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from pylint->spyder==3.3.3->mesmerize) (0.6.1)
Requirement already satisfied: isort<6,>=4.2.5 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from pylint->spyder==3.3.3->mesmerize) (5.7.0)
Requirement already satisfied: toml>=0.7.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from pylint->spyder==3.3.3->mesmerize) (0.10.2)
Requirement already satisfied: astroid<=2.5,>=2.4.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from pylint->spyder==3.3.3->mesmerize) (2.4.2)
Requirement already satisfied: wrapt~=1.11 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from astroid<=2.5,>=2.4.0->pylint->spyder==3.3.3->mesmerize) (1.11.2)
Requirement already satisfied: typed-ast<1.5,>=1.4.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from astroid<=2.5,>=2.4.0->pylint->spyder==3.3.3->mesmerize) (1.4.1)
Requirement already satisfied: lazy-object-proxy==1.4.* in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from astroid<=2.5,>=2.4.0->pylint->spyder==3.3.3->mesmerize) (1.4.3)
Requirement already satisfied: hdmf<3,>=2.1.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from pynwb->mesmerize) (2.2.0)
Requirement already satisfied: ruamel.yaml>=0.15 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from hdmf<3,>=2.1.0->pynwb->mesmerize) (0.16.12)
Requirement already satisfied: ruamel.yaml.clib>=0.1.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from ruamel.yaml>=0.15->hdmf<3,>=2.1.0->pynwb->mesmerize) (0.2.2)
Collecting qtap
  Using cached qtap-0.1.2-py3-none-any.whl (19 kB)
Collecting sk-video
  Using cached sk_video-1.1.10-py2.py3-none-any.whl (2.3 MB)
Collecting tcl
  Using cached Tcl-0.2-py3-none-any.whl (2.4 kB)
Collecting tk
  Using cached tk-0.1.0-py3-none-any.whl (3.9 kB)
Building wheels for collected packages: psutil
  Building wheel for psutil (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: /opt/anaconda3/envs/mesmerize/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-m92bn54t/psutil_576054bc669247aa998ed22374c67e1c/setup.py'"'"'; __file__='"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-m92bn54t/psutil_576054bc669247aa998ed22374c67e1c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-wheel-rnfp8_qo
       cwd: /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-m92bn54t/psutil_576054bc669247aa998ed22374c67e1c/
  Complete output (44 lines):
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.7-x86_64-3.6
  creating build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pswindows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_common.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psosx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psbsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psaix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pslinux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_compat.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psposix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pssunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  creating build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_contracts.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_connections.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/runner.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_unicode.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_misc.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_posix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_linux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_sunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_aix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_process.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_bsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_system.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_osx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_memleaks.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_windows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/__main__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_testutils.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  running build_ext
  building 'psutil._psutil_osx' extension
  creating build/temp.macosx-10.7-x86_64-3.6
  creating build/temp.macosx-10.7-x86_64-3.6/psutil
  creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch
  creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch/osx
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=573 -DPSUTIL_OSX=1 -I/opt/anaconda3/envs/mesmerize/include/python3.6m -c psutil/_psutil_common.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_common.o
  xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
  error: command 'gcc' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for psutil
  Running setup.py clean for psutil
Failed to build psutil
Installing collected packages: psutil, numexpr, llvmlite, tk, tcl, tables, spyder, sk-video, seaborn, qtap, opencv-python, opencv-contrib-python, nuset-lib, numba, jupyter, graphviz, mesmerize
  Attempting uninstall: psutil
    Found existing installation: psutil 5.8.0
    Uninstalling psutil-5.8.0:
      Successfully uninstalled psutil-5.8.0
    Running setup.py install for psutil ... error
    ERROR: Command errored out with exit status 1:
     command: /opt/anaconda3/envs/mesmerize/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-m92bn54t/psutil_576054bc669247aa998ed22374c67e1c/setup.py'"'"'; __file__='"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-m92bn54t/psutil_576054bc669247aa998ed22374c67e1c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-record-9c9z1nkv/install-record.txt --single-version-externally-managed --compile --install-headers /opt/anaconda3/envs/mesmerize/include/python3.6m/psutil
         cwd: /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-m92bn54t/psutil_576054bc669247aa998ed22374c67e1c/
    Complete output (44 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.macosx-10.7-x86_64-3.6
    creating build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pswindows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_common.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psosx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psbsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psaix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pslinux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_compat.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psposix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pssunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    creating build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_contracts.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_connections.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/runner.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_unicode.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_misc.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_posix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_linux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_sunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_aix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_process.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_bsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_system.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_osx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_memleaks.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_windows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/__main__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_testutils.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    running build_ext
    building 'psutil._psutil_osx' extension
    creating build/temp.macosx-10.7-x86_64-3.6
    creating build/temp.macosx-10.7-x86_64-3.6/psutil
    creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch
    creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch/osx
    gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=573 -DPSUTIL_OSX=1 -I/opt/anaconda3/envs/mesmerize/include/python3.6m -c psutil/_psutil_common.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_common.o
    xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
    error: command 'gcc' failed with exit status 1
    ----------------------------------------
  Rolling back uninstall of psutil
  Moving to /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages/psutil-5.8.0.dist-info/
   from /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages/~sutil-5.8.0.dist-info
  Moving to /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages/psutil/
   from /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages/~sutil
ERROR: Command errored out with exit status 1: /opt/anaconda3/envs/mesmerize/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-m92bn54t/psutil_576054bc669247aa998ed22374c67e1c/setup.py'"'"'; __file__='"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-m92bn54t/psutil_576054bc669247aa998ed22374c67e1c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-record-9c9z1nkv/install-record.txt --single-version-externally-managed --compile --install-headers /opt/anaconda3/envs/mesmerize/include/python3.6m/psutil Check the logs for full command output.
  1. Are you using anaconda, python virtual environments, or something else? conda 4.9.2
  2. If you're installing mesmerize through pip, what version of pip is installed in the environment? pip 20.3.3
  3. What is the python version in the environment you're trying to install mesmerize in? python 3.6
kushalkolar commented 3 years ago

Hi @ASiliciano , thanks for providing all the details!

You're missing gcc and xcode entirely, see this from your output:

  xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
  error: command 'gcc' failed with exit status 1

First try installing xcode:

xcode-select --install

If that doesn't work you may need to reset it (apparently there can be problems with xcode if you already had it installed and recently updated the OS):

sudo xcode-select --reset

If that doesn't help you may need to manually install it from the apple website: https://developer.apple.com/download/more/

See these for more information:

https://apple.stackexchange.com/questions/254380/why-am-i-getting-an-invalid-active-developer-path-when-attempting-to-use-git-a

https://ma.ttias.be/mac-os-xcrun-error-invalid-active-developer-path-missing-xcrun/

Some more help by googling install xcode and gcc: https://www.google.com/search?sxsrf=ALeKk01K8PcfUW65gJA6fRUQsswSVnoEPw%3A1609720552728&ei=6GLyX5_0K4z8sAfxhqW4CQ&q=install+xcode+and+gcc&oq=install+xcode+and+gcc&gs_lcp=CgZwc3ktYWIQAzIJCAAQyQMQFhAeOgQIABBHOggIABDJAxCRAjoFCAAQkQI6BAgAEEM6AggAOgcIABAUEIcCOgUIABDJAzoGCAAQFhAeUOS5Alj8ygJg_MsCaABwA3gAgAFiiAGuCJIBAjEzmAEAoAEBqgEHZ3dzLXdpesgBCMABAQ&sclient=psy-ab&ved=0ahUKEwifiO6thIHuAhUMPuwKHXFDCZcQ4dUDCA0&uact=5

ASiliciano commented 3 years ago

Thanks, @kushalkolar. I followed the suggested steps but I'm still having an issue. Any suggestions would be greatly appreciated. Thanks!

(mesmerize) andrews-mbp-2:~ andrewsiliciano$ pip install mesmerize
Collecting mesmerize
  Using cached mesmerize-0.4.1-py3-none-any.whl (1.2 MB)
Requirement already satisfied: bokeh>=2.2.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (2.2.3)
Requirement already satisfied: dask>=1.1.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (2020.12.0)
Requirement already satisfied: PyQt5<=5.12,>=5.9.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (5.12)
Requirement already satisfied: joblib>=0.15.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.0.0)
Requirement already satisfied: holoviews in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.14.1)
Requirement already satisfied: QtPy>=1.6.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.9.0)
Requirement already satisfied: scipy>=1.2.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.5.3)
Requirement already satisfied: PeakUtils in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.3.3)
Requirement already satisfied: pynwb in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.4.0)
Requirement already satisfied: ipython>=7.15.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (7.16.1)
Requirement already satisfied: pyqtgraph in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.11.1)
Requirement already satisfied: matplotlib<=3.2.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (3.2.1)
Requirement already satisfied: ipykernel>=4.10 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (5.4.2)
Requirement already satisfied: pandas~=0.25.3 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.25.3)
Requirement already satisfied: python-dateutil>=2.8.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (2.8.1)
Requirement already satisfied: scikit-learn>=0.20.2 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.24.0)
Requirement already satisfied: tifffile in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (0.15.1)
Requirement already satisfied: tqdm>=4.37.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (4.55.0)
Requirement already satisfied: Pillow>=5.4.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (8.0.1)
Requirement already satisfied: h5py~=2.10.0 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (2.10.0)
Requirement already satisfied: MarkupSafe>=1.1.1 in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (from mesmerize) (1.1.1)
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Collecting seaborn==0.9.0
  Using cached seaborn-0.9.0-py3-none-any.whl (208 kB)
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Collecting spyder==3.3.3
  Using cached spyder-3.3.3-py3-none-any.whl (2.8 MB)
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Collecting graphviz>=0.13
  Using cached graphviz-0.16-py2.py3-none-any.whl (19 kB)
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Collecting numba>=0.50.0
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Collecting llvmlite<0.36,>=0.35.0
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Collecting opencv-contrib-python>=4.2
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Collecting opencv-python>=4.2
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Collecting psutil~=5.7.0
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Collecting tables>=3.6.1
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Collecting numexpr>=2.6.2
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Collecting jupyter
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Collecting nuset-lib
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Collecting qtap
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Collecting sk-video
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Collecting tk
  Using cached tk-0.1.0-py3-none-any.whl (3.9 kB)
Building wheels for collected packages: psutil
  Building wheel for psutil (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: /opt/anaconda3/envs/mesmerize/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-0curmk5i/psutil_4b03cd726d284c2da9f6404d4521e208/setup.py'"'"'; __file__='"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-0curmk5i/psutil_4b03cd726d284c2da9f6404d4521e208/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-wheel-6w6h5bkx
       cwd: /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-0curmk5i/psutil_4b03cd726d284c2da9f6404d4521e208/
  Complete output (133 lines):
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.7-x86_64-3.6
  creating build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pswindows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_common.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psosx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psbsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psaix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pslinux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_compat.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_psposix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  copying psutil/_pssunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
  creating build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_contracts.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_connections.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/runner.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_unicode.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_misc.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_posix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_linux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_sunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_aix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_process.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_bsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_system.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_osx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_memleaks.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_windows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/__main__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  copying psutil/tests/test_testutils.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
  running build_ext
  building 'psutil._psutil_osx' extension
  creating build/temp.macosx-10.7-x86_64-3.6
  creating build/temp.macosx-10.7-x86_64-3.6/psutil
  creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch
  creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch/osx
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=573 -DPSUTIL_OSX=1 -I/opt/anaconda3/envs/mesmerize/include/python3.6m -c psutil/_psutil_common.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_common.o
  In file included from psutil/_psutil_common.c:9:
  In file included from /opt/anaconda3/envs/mesmerize/include/python3.6m/Python.h:77:
  /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:200:52: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
  PyAPI_FUNC(int) _PyTime_localtime(time_t t, struct tm *tm);
                                                     ^
  /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:204:49: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
  PyAPI_FUNC(int) _PyTime_gmtime(time_t t, struct tm *tm);
                                                  ^
  2 warnings generated.
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=573 -DPSUTIL_OSX=1 -I/opt/anaconda3/envs/mesmerize/include/python3.6m -c psutil/_psutil_posix.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_posix.o
  In file included from psutil/_psutil_posix.c:9:
  In file included from /opt/anaconda3/envs/mesmerize/include/python3.6m/Python.h:77:
  /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:200:52: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
  PyAPI_FUNC(int) _PyTime_localtime(time_t t, struct tm *tm);
                                                     ^
  /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:204:49: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
  PyAPI_FUNC(int) _PyTime_gmtime(time_t t, struct tm *tm);
                                                  ^
  2 warnings generated.
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=573 -DPSUTIL_OSX=1 -I/opt/anaconda3/envs/mesmerize/include/python3.6m -c psutil/_psutil_osx.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_osx.o
  In file included from psutil/_psutil_osx.c:9:
  In file included from /opt/anaconda3/envs/mesmerize/include/python3.6m/Python.h:77:
  /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:200:52: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
  PyAPI_FUNC(int) _PyTime_localtime(time_t t, struct tm *tm);
                                                     ^
  /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:204:49: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
  PyAPI_FUNC(int) _PyTime_gmtime(time_t t, struct tm *tm);
                                                  ^
  In file included from psutil/_psutil_osx.c:37:
  In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreFoundation.framework/Headers/CoreFoundation.h:43:
  In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreFoundation.framework/Headers/CFBase.h:73:
  /usr/local/include/Block.h:16:3: error: Never include this file directly. Use <lzma.h> instead.
  #       error Never include this file directly. Use <lzma.h> instead.
          ^
  /usr/local/include/Block.h:93:2: error: unknown type name 'lzma_check'
          lzma_check check;
          ^
  /usr/local/include/Block.h:148:2: error: unknown type name 'lzma_vli'
          lzma_vli compressed_size;
          ^
  /usr/local/include/Block.h:172:2: error: unknown type name 'lzma_vli'
          lzma_vli uncompressed_size;
          ^
  /usr/local/include/Block.h:200:2: error: unknown type name 'lzma_filter'
          lzma_filter *filters;
          ^
  /usr/local/include/Block.h:217:20: error: use of undeclared identifier 'LZMA_CHECK_SIZE_MAX'
          uint8_t raw_check[LZMA_CHECK_SIZE_MAX];
                            ^
  /usr/local/include/Block.h:231:2: error: unknown type name 'lzma_vli'
          lzma_vli reserved_int3;
          ^
  /usr/local/include/Block.h:232:2: error: unknown type name 'lzma_vli'
          lzma_vli reserved_int4;
          ^
  /usr/local/include/Block.h:233:2: error: unknown type name 'lzma_vli'
          lzma_vli reserved_int5;
          ^
  /usr/local/include/Block.h:234:2: error: unknown type name 'lzma_vli'
          lzma_vli reserved_int6;
          ^
  /usr/local/include/Block.h:235:2: error: unknown type name 'lzma_vli'
          lzma_vli reserved_int7;
          ^
  /usr/local/include/Block.h:236:2: error: unknown type name 'lzma_vli'
          lzma_vli reserved_int8;
          ^
  /usr/local/include/Block.h:237:2: error: unknown type name 'lzma_reserved_enum'
          lzma_reserved_enum reserved_enum1;
          ^
  /usr/local/include/Block.h:238:2: error: unknown type name 'lzma_reserved_enum'
          lzma_reserved_enum reserved_enum2;
          ^
  /usr/local/include/Block.h:239:2: error: unknown type name 'lzma_reserved_enum'
          lzma_reserved_enum reserved_enum3;
          ^
  /usr/local/include/Block.h:240:2: error: unknown type name 'lzma_reserved_enum'
          lzma_reserved_enum reserved_enum4;
          ^
  /usr/local/include/Block.h:261:2: error: unknown type name 'lzma_bool'
          lzma_bool ignore_check;
          ^
  /usr/local/include/Block.h:263:2: error: unknown type name 'lzma_bool'
          lzma_bool reserved_bool2;
          ^
  /usr/local/include/Block.h:264:2: error: unknown type name 'lzma_bool'
          lzma_bool reserved_bool3;
          ^
  fatal error: too many errors emitted, stopping now [-ferror-limit=]
  2 warnings and 20 errors generated.
  error: command 'gcc' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for psutil
  Running setup.py clean for psutil
Failed to build psutil
Installing collected packages: psutil, numexpr, llvmlite, tk, tcl, tables, spyder, sk-video, seaborn, qtap, opencv-python, opencv-contrib-python, nuset-lib, numba, jupyter, graphviz, mesmerize
  Attempting uninstall: psutil
    Found existing installation: psutil 5.8.0
    Uninstalling psutil-5.8.0:
      Successfully uninstalled psutil-5.8.0
    Running setup.py install for psutil ... error
    ERROR: Command errored out with exit status 1:
     command: /opt/anaconda3/envs/mesmerize/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-0curmk5i/psutil_4b03cd726d284c2da9f6404d4521e208/setup.py'"'"'; __file__='"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-0curmk5i/psutil_4b03cd726d284c2da9f6404d4521e208/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-record-p8_g2jp0/install-record.txt --single-version-externally-managed --compile --install-headers /opt/anaconda3/envs/mesmerize/include/python3.6m/psutil
         cwd: /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-0curmk5i/psutil_4b03cd726d284c2da9f6404d4521e208/
    Complete output (133 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.macosx-10.7-x86_64-3.6
    creating build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pswindows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_common.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psosx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psbsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psaix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pslinux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_compat.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_psposix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    copying psutil/_pssunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil
    creating build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_contracts.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_connections.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/runner.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_unicode.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_misc.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_posix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_linux.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_sunos.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_aix.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_process.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_bsd.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_system.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_osx.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_memleaks.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_windows.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/__main__.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    copying psutil/tests/test_testutils.py -> build/lib.macosx-10.7-x86_64-3.6/psutil/tests
    running build_ext
    building 'psutil._psutil_osx' extension
    creating build/temp.macosx-10.7-x86_64-3.6
    creating build/temp.macosx-10.7-x86_64-3.6/psutil
    creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch
    creating build/temp.macosx-10.7-x86_64-3.6/psutil/arch/osx
    gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=573 -DPSUTIL_OSX=1 -I/opt/anaconda3/envs/mesmerize/include/python3.6m -c psutil/_psutil_common.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_common.o
    In file included from psutil/_psutil_common.c:9:
    In file included from /opt/anaconda3/envs/mesmerize/include/python3.6m/Python.h:77:
    /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:200:52: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
    PyAPI_FUNC(int) _PyTime_localtime(time_t t, struct tm *tm);
                                                       ^
    /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:204:49: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
    PyAPI_FUNC(int) _PyTime_gmtime(time_t t, struct tm *tm);
                                                    ^
    2 warnings generated.
    gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=573 -DPSUTIL_OSX=1 -I/opt/anaconda3/envs/mesmerize/include/python3.6m -c psutil/_psutil_posix.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_posix.o
    In file included from psutil/_psutil_posix.c:9:
    In file included from /opt/anaconda3/envs/mesmerize/include/python3.6m/Python.h:77:
    /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:200:52: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
    PyAPI_FUNC(int) _PyTime_localtime(time_t t, struct tm *tm);
                                                       ^
    /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:204:49: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
    PyAPI_FUNC(int) _PyTime_gmtime(time_t t, struct tm *tm);
                                                    ^
    2 warnings generated.
    gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -I/opt/anaconda3/envs/mesmerize/include -arch x86_64 -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=573 -DPSUTIL_OSX=1 -I/opt/anaconda3/envs/mesmerize/include/python3.6m -c psutil/_psutil_osx.c -o build/temp.macosx-10.7-x86_64-3.6/psutil/_psutil_osx.o
    In file included from psutil/_psutil_osx.c:9:
    In file included from /opt/anaconda3/envs/mesmerize/include/python3.6m/Python.h:77:
    /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:200:52: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
    PyAPI_FUNC(int) _PyTime_localtime(time_t t, struct tm *tm);
                                                       ^
    /opt/anaconda3/envs/mesmerize/include/python3.6m/pytime.h:204:49: warning: declaration of 'struct tm' will not be visible outside of this function [-Wvisibility]
    PyAPI_FUNC(int) _PyTime_gmtime(time_t t, struct tm *tm);
                                                    ^
    In file included from psutil/_psutil_osx.c:37:
    In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreFoundation.framework/Headers/CoreFoundation.h:43:
    In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreFoundation.framework/Headers/CFBase.h:73:
    /usr/local/include/Block.h:16:3: error: Never include this file directly. Use <lzma.h> instead.
    #       error Never include this file directly. Use <lzma.h> instead.
            ^
    /usr/local/include/Block.h:93:2: error: unknown type name 'lzma_check'
            lzma_check check;
            ^
    /usr/local/include/Block.h:148:2: error: unknown type name 'lzma_vli'
            lzma_vli compressed_size;
            ^
    /usr/local/include/Block.h:172:2: error: unknown type name 'lzma_vli'
            lzma_vli uncompressed_size;
            ^
    /usr/local/include/Block.h:200:2: error: unknown type name 'lzma_filter'
            lzma_filter *filters;
            ^
    /usr/local/include/Block.h:217:20: error: use of undeclared identifier 'LZMA_CHECK_SIZE_MAX'
            uint8_t raw_check[LZMA_CHECK_SIZE_MAX];
                              ^
    /usr/local/include/Block.h:231:2: error: unknown type name 'lzma_vli'
            lzma_vli reserved_int3;
            ^
    /usr/local/include/Block.h:232:2: error: unknown type name 'lzma_vli'
            lzma_vli reserved_int4;
            ^
    /usr/local/include/Block.h:233:2: error: unknown type name 'lzma_vli'
            lzma_vli reserved_int5;
            ^
    /usr/local/include/Block.h:234:2: error: unknown type name 'lzma_vli'
            lzma_vli reserved_int6;
            ^
    /usr/local/include/Block.h:235:2: error: unknown type name 'lzma_vli'
            lzma_vli reserved_int7;
            ^
    /usr/local/include/Block.h:236:2: error: unknown type name 'lzma_vli'
            lzma_vli reserved_int8;
            ^
    /usr/local/include/Block.h:237:2: error: unknown type name 'lzma_reserved_enum'
            lzma_reserved_enum reserved_enum1;
            ^
    /usr/local/include/Block.h:238:2: error: unknown type name 'lzma_reserved_enum'
            lzma_reserved_enum reserved_enum2;
            ^
    /usr/local/include/Block.h:239:2: error: unknown type name 'lzma_reserved_enum'
            lzma_reserved_enum reserved_enum3;
            ^
    /usr/local/include/Block.h:240:2: error: unknown type name 'lzma_reserved_enum'
            lzma_reserved_enum reserved_enum4;
            ^
    /usr/local/include/Block.h:261:2: error: unknown type name 'lzma_bool'
            lzma_bool ignore_check;
            ^
    /usr/local/include/Block.h:263:2: error: unknown type name 'lzma_bool'
            lzma_bool reserved_bool2;
            ^
    /usr/local/include/Block.h:264:2: error: unknown type name 'lzma_bool'
            lzma_bool reserved_bool3;
            ^
    fatal error: too many errors emitted, stopping now [-ferror-limit=]
    2 warnings and 20 errors generated.
    error: command 'gcc' failed with exit status 1
    ----------------------------------------
  Rolling back uninstall of psutil
  Moving to /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages/psutil-5.8.0.dist-info/
   from /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages/~sutil-5.8.0.dist-info
  Moving to /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages/psutil/
   from /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages/~sutil
ERROR: Command errored out with exit status 1: /opt/anaconda3/envs/mesmerize/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-0curmk5i/psutil_4b03cd726d284c2da9f6404d4521e208/setup.py'"'"'; __file__='"'"'/private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-install-0curmk5i/psutil_4b03cd726d284c2da9f6404d4521e208/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/97/gwt2yy_s4t7927qwbpd95hkc0000gn/T/pip-record-p8_g2jp0/install-record.txt --single-version-externally-managed --compile --install-headers /opt/anaconda3/envs/mesmerize/include/python3.6m/psutil Check the logs for full command output.
kushalkolar commented 3 years ago

From the output it says that gcc still isn't installed. See if gcc is installed by calling gcc -v or gcc --version.

If it isn't installed you'd get better help by googling "install gcc macos" or "gcc not installed after installing xcode"

If it is installed it might be an anaconda issue and I'd suggest completely removing anaconda and doing a clean new install.

ASiliciano commented 3 years ago

It seems that gcc is installed:

(mesmerize) andrews-mbp-2:~ andrewsiliciano$ gcc --version
Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/4.2.1
Apple clang version 12.0.0 (clang-1200.0.32.28)
Target: x86_64-apple-darwin20.2.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin

I just deleted and reinstalled anaconda and am getting the same error message. gcc is still installed. Any help would be greatly appreciated. Thanks!

kushalkolar commented 3 years ago

This seems like there's an issue with building psutil v5.7 on the lastest mac os, can you try just installed psutil through pip (it should get the latest, i.e. v5.8 by default). If that works I can update it for mesmerize.

ASiliciano commented 3 years ago

Thanks @kushalkolar. This is all a bit new for me, so I appreciate the patience. It seems as though psutil 5.8 is installed:

(mesmerize) andrews-mbp-2:~ andrewsiliciano$ pip install psutil
Requirement already satisfied: psutil in /opt/anaconda3/envs/mesmerize/lib/python3.6/site-packages (5.8.0)
kushalkolar commented 3 years ago

Alright, I guess psutil v5.7 which is specified by mesmerize doesn't work with the latest version of macosx, I'll update the psutil version in next release of mesmerize and let you know when it's available.

kushalkolar commented 3 years ago

psutil v5.8 is now required by setup in the next release