Within batch_run_modules, change the tiff save operation to save the files in different format, with parameters bigtiff=True and imagej=False instead of current parameters bigtiff=True and imagej=True.
This change removes the warning thrown by tifffile, allows files to be opened by Inscopix software (currently they throw an error), and with this change the files can still be opened by other software such as imagej.
I have tested MESmerize with multiple runs through motion correction, CNMFE on Windows with no problems. Have not tested on Linux/mac.
Within
batch_run_modules
, change the tiff save operation to save the files in different format, with parametersbigtiff=True
andimagej=False
instead of current parametersbigtiff=True
andimagej=True
.This change removes the warning thrown by
tifffile
, allows files to be opened by Inscopix software (currently they throw an error), and with this change the files can still be opened by other software such asimagej
.I have tested MESmerize with multiple runs through motion correction, CNMFE on Windows with no problems. Have not tested on Linux/mac.