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kushalkolar / MESmerize

Platform for Calcium Imaging analysis. DEPRECATED.
GNU General Public License v3.0
58 stars 14 forks source link

updated tifffile.imsave to save in imagej False/bigtiff True format #78

Closed EricThomson closed 2 years ago

EricThomson commented 2 years ago

Within batch_run_modules, change the tiff save operation to save the files in different format, with parameters bigtiff=True and imagej=False instead of current parameters bigtiff=True and imagej=True.

This change removes the warning thrown by tifffile, allows files to be opened by Inscopix software (currently they throw an error), and with this change the files can still be opened by other software such as imagej.

I have tested MESmerize with multiple runs through motion correction, CNMFE on Windows with no problems. Have not tested on Linux/mac.

kushalkolar commented 2 years ago

Looks good, thanks! I think this is better than having imagej=True which is undocumented anyways.