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kushalkolar
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MESmerize
Platform for Calcium Imaging analysis. DEPRECATED.
GNU General Public License v3.0
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Towards v0.9, conda install, update package versions etc.
#81
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kushalkolar
closed
1 year ago
kushalkolar
commented
2 years ago
[ ] conda install process: install mesmerize in conda env after installing caiman
[ ] Check that latest pandas works with h5py v2.10.0
[ ] update mesmerize tslearn stuff to work with latest tslearn and latest sklearn
[ ] check that stuff works with latest matplotlib
[ ] latest seaborn
[ ] latest spyder, or remove spyder stuff
[x] make bokeh optional
[x] make nuset optional
[x] allow decimal values for
min_snr
and
min_pnr
in cnmfe, @EricThomson
[x] fix script editor
HOME
env var problem in Windows
[x] require python3.8
[ ] release VM with mesmerize v0.9
[ ] save tiff files using
image=False
, this flag is undocumented
[ ] export ROI manager stuff to csv, see #91 , contributed by @EricThomson
min_snr
andmin_pnr
in cnmfe, @EricThomsonHOME
env var problem in Windowsimage=False
, this flag is undocumented