Describe the bug
When running CNMF on a 3D image, (in this case 7 Z-planes and 500 Time-frames) the output is rotated 90 degrees relative to the image.
Load Warwick_test.tif using asarray and choose json_minimal format. This file should be loaded used a custom Image Axes order of tzyx, although the bug persists using the default order of tzxy so that isn't actually an issue. There should be 7 z-planes in this image.
Make a batch and run default settings CNMF (the specific CNMF settings don't seem to matter)
View the finished CNMF and the ROIs should be rotates 90 degrees relative the image.
Expected behavior
Using a single Z-plane for CNMF the ROIs are lined up correctly and I expected this to occur.
**Operating System & specs (CPU, RAM etc.).
Running 64 bit Windows 10, but using the VM.
-i7 8700
-32gb RAM
-512 gb SSD
Details about your Mesmerize install
-I am using the VirtualBox VM of Mesmerize
Describe the bug When running CNMF on a 3D image, (in this case 7 Z-planes and 500 Time-frames) the output is rotated 90 degrees relative to the image.
To Reproduce
Expected behavior Using a single Z-plane for CNMF the ROIs are lined up correctly and I expected this to occur.
**Operating System & specs (CPU, RAM etc.).
Details about your Mesmerize install -I am using the VirtualBox VM of Mesmerize