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kushalkolar / MESmerize

Platform for Calcium Imaging analysis. DEPRECATED.
GNU General Public License v3.0
58 stars 14 forks source link

caiman package not found #85

Closed katesal327 closed 2 years ago

katesal327 commented 2 years ago

Please try these things before posting an installation issue:

  1. Create a fresh new anaconda or virtual environment.

  2. If you're having difficulties with caiman installation try installing a specific version, for example: conda install -c conda-forge caiman==1.8.5

  3. If you want to use caiman features, caiman must but installed in the same environment as mesmerize.

  4. If you want to use certain features like kshape clustering or cross-correlation, tslearn must be installed in the same environment as mesmerize.

Otherwise use this template:

System information

  1. OS (ex. Windows 10, Mac OSX Mojave, Ubuntu 20.04 LTS) Windows 10
  2. CPU (ex. Intel i7 9700k, AMD Ryzen 3950x) Intel i7
  3. RAM 32
  4. Do you have an SSD or magnetic HDD SSD Copy & paste the entire output of the terminal while you were trying to install when the issue came up: (base) PS C:\Users\kates> conda activate mesmerize (mesmerize) PS C:\Users\kates> mesmerize C:\Users\kates\anaconda3\envs\mesmerize\lib\site-packages\mesmerize\common\configuration.py:38: UserWarning: Caiman package not found. Caiman features will be disabled. "Caiman package not found. " C:\Users\kates\anaconda3\envs\mesmerize\lib\site-packages\sklearn\utils\deprecation.py:143: FutureWarning: The sklearn.cluster.kmeans module is deprecated in version 0.22 and will be removed in version 0.24. The corresponding classes / functions should instead be imported from sklearn.cluster. Anything that cannot be imported from sklearn.cluster is now part of the private API. warnings.warn(message, FutureWarning) Loading, please wait...


**Installation method**
1. Are you using anaconda, python virtual environments, or something else?
  -> if using conda, what is the conda version
4.11.0
2. If you're installing mesmerize through pip, what version of pip is installed in the environment?
pip 21.2.2
3. Are you trying to install in developer mode from the repo?
no
5. What is the python version in the environment you're trying to install `mesmerize` in?
3.6.13
8. Information if you're using some other installation method.
kushalkolar commented 2 years ago

Did you install caiman into the same environment as mesmerize

katesal327 commented 2 years ago

yes, I did. trying again now

katesal327 commented 2 years ago

installed when mesmerize environment was activated. the path to both caiman and mesmerize is this on my C:

/Users/kates/anaconda3/env/ caiman mesmerize

Is that correct? caiman_data is in /Users/kates/

kushalkolar commented 2 years ago

You also need to run the caimanmanager.py after installing caiman

kushalkolar commented 2 years ago

Both caiman and mesmerize have to be installed in the same environment

katesal327 commented 2 years ago

right, meaning I am installing caiman within the mesmerize environment, correct?

katesal327 commented 2 years ago

(mesmerize) C:\Users\kates>python C:\Users\kates\anaconda3\envs\caiman\bin\caimanmanager.py install Traceback (most recent call last): File "C:\Users\kates\anaconda3\envs\caiman\bin\caimanmanager.py", line 16, in from caiman.paths import caiman_datadir ModuleNotFoundError: No module named 'caiman'

my current error

kushalkolar commented 2 years ago

What do you get when you open ipython and run import caiman

katesal327 commented 2 years ago

ModuleNotFoundError Traceback (most recent call last) ~\AppData\Local\Temp/ipykernel_17312/156116295.py in ----> 1 import caiman

ModuleNotFoundError: No module named 'caiman'

kushalkolar commented 2 years ago

How did you try installing caiman?

katesal327 commented 2 years ago

the package install according to the documentation

From: Kushal Kolar @.> Sent: Monday, February 28, 2022 1:06 PM To: kushalkolar/MESmerize @.> Cc: Kathryn Salvati @.>; Author @.> Subject: Re: [kushalkolar/MESmerize] caiman package not found (Issue #85)

How did you try installing caiman? — Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread. ‍ ‍ ‍ ‍ ‍ ‍ ZjQcmQRYFpfptBannerStart This Message Is From an External Sender This message came from outside your organization. ZjQcmQRYFpfptBannerEnd

How did you try installing caiman?

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kushalkolar commented 2 years ago

Can you create a new environment and install caiman, and then try to import caiman. Outline the exact steps you're taking.

katesal327 commented 2 years ago

will do:

1) This process is the same on every operating system Follow this process if you won’t need to work with the CaImAn sources and instead wish to use it as a library (the demos still work this way, and you can use/modify them). You do not need a compiler for this route. You should not download the sources (with git or otherwise) for this route. This route also sets environment variables for you (skip that section below) Download and install Anaconda (Python 3.x) http://docs.continuum.io/anaconda/install. Allow the installer to modify your PATH variable Install mamba into your base environment, with ‘conda install -n base -c conda-forge mamba’ Create a new environment with the caiman package from conda-forge: If you are installing on Windows, use the conda enabled shell (under “Anaconda” in your programs menu) rather than powershell or a generic prompt mamba create -n caiman -c conda-forge caiman conda activate caiman

caiman is now installed...new to python...what do you mean by import?

kushalkolar commented 2 years ago

Run ipython in that environment and run "import caiman"

By outlining your steps I mean can you list out the steps exactly as you are typing them in, and where you're typing them in. Since you're unable to import caiman I'm guessing that you're making a simple mistake somewhere that I'm trying to pin down.

katesal327 commented 2 years ago
  1. conda activate caiman C:\Users\kates>set MKL_NUM_THREADS=1

C:\Users\kates>set OPENBLAS_NUM_THREADS=1

Note: you may need to restart the kernel to use updated packages.

  1. import caiman

    ModuleNotFoundError Traceback (most recent call last) ~\AppData\Local\Temp/ipykernel_5464/156116295.py in ----> 1 import caiman

ModuleNotFoundError: No module named 'caiman'

kushalkolar commented 2 years ago

Can you please run exactly this in the anaconda shell and either provide a screenshot or copy paste the entire output.

mamba create -n caiman-test -c conda-forge caiman
conda activate caiman-test
python3 -c "import caiman;print(caiman.__version__)"
katesal327 commented 2 years ago

(base) PS C:\Users\kates> mamba create -n caiman-test -c conda-forge caiman

              __    __    __    __
             /  \  /  \  /  \  /  \
            /    \/    \/    \/    \

███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ _ / / _/ _/ _/ \ o _, / _/ ___/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝

    mamba (0.7.6) supported by @QuantStack

    GitHub:  https://github.com/mamba-org/mamba
    Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

Looking for: ['caiman']

pkgs/r/win-64 [====================] (00m:00s) No change pkgs/main/noarch [====================] (00m:00s) No change pkgs/main/win-64 [====================] (00m:00s) No change pkgs/msys2/win-64 [====================] (00m:00s) No change pkgs/msys2/noarch [====================] (00m:00s) No change conda-forge/win-64 [====================] (00m:00s) No change pkgs/r/noarch [====================] (00m:00s) No change conda-forge/noarch [====================] (00m:02s) Done Transaction

Prefix: C:\Users\kates\anaconda3\envs\caiman-test

Updating specs:

Confirm changes: [Y/n] y

Downloading and Extracting Packages keras-applications-1 | 30 KB | ####################################################################################################################################################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: | Enabling notebook extension jupyter-js-widgets/extension...

done #

To activate this environment, use

#

$ conda activate caiman-test

#

To deactivate an active environment, use

#

$ conda deactivate

(base) PS C:\Users\kates> conda activate caiman-test (caiman-test) PS C:\Users\kates> python3 -c "import caiman; print(caiman.version)" Python was not found; run without arguments to install from the Microsoft Store, or disable this shortcut from Settings > Manage App Execution Aliases. (caiman-test) PS C:\Users\kates> python3 -c Python was not found; run without arguments to install from the Microsoft Store, or disable this shortcut from Settings > Manage App Execution Aliases. (caiman-test) PS C:\Users\kates> python -c "import caiman; print(caiman.version)" Traceback (most recent call last): File "", line 1, in AttributeError: module 'caiman' has no attribute 'version' (caiman-test) PS C:\Users\kates> python -c "import caiman; print()"

(caiman-test) PS C:\Users\kates> python -c "import caiman; print(version)" Traceback (most recent call last): File "", line 1, in NameError: name 'version' is not defined (caiman-test) PS C:\Users\kates>

kushalkolar commented 2 years ago

Ok looks like you've gotten caiman installed in that environment, not sure why the version string doesn't show up.

Can you now try this in the same caiman-test environment:

pip install git+https://github.com/kushalkolar/MESmerize.git
katesal327 commented 2 years ago

(base) PS C:\Users\kates> mamba create -n caiman-test -c conda-forge caiman

              __    __    __    __
             /  \  /  \  /  \  /  \
            /    \/    \/    \/    \

███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ _ / / _/ _/ _/ \ o _, / _/ ___/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝

    mamba (0.7.6) supported by @QuantStack

    GitHub:  https://github.com/mamba-org/mamba
    Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

Looking for: ['caiman']

pkgs/r/win-64 [====================] (00m:00s) No change pkgs/main/noarch [====================] (00m:00s) No change pkgs/main/win-64 [====================] (00m:00s) No change pkgs/msys2/win-64 [====================] (00m:00s) No change pkgs/msys2/noarch [====================] (00m:00s) No change conda-forge/win-64 [====================] (00m:00s) No change pkgs/r/noarch [====================] (00m:00s) No change conda-forge/noarch [====================] (00m:02s) Done Transaction

Prefix: C:\Users\kates\anaconda3\envs\caiman-test

Updating specs:

Confirm changes: [Y/n] y

Downloading and Extracting Packages keras-applications-1 | 30 KB | ####################################################################################################################################################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: | Enabling notebook extension jupyter-js-widgets/extension...

done #

To activate this environment, use

#

$ conda activate caiman-test

#

To deactivate an active environment, use

#

$ conda deactivate

(base) PS C:\Users\kates> conda activate caiman-test (caiman-test) PS C:\Users\kates> python3 -c "import caiman; print(caiman.version)" Python was not found; run without arguments to install from the Microsoft Store, or disable this shortcut from Settings > Manage App Execution Aliases. (caiman-test) PS C:\Users\kates> python3 -c Python was not found; run without arguments to install from the Microsoft Store, or disable this shortcut from Settings > Manage App Execution Aliases. (caiman-test) PS C:\Users\kates> python -c "import caiman; print(caiman.version)" Traceback (most recent call last): File "", line 1, in AttributeError: module 'caiman' has no attribute 'version' (caiman-test) PS C:\Users\kates> python -c "import caiman; print()"

(caiman-test) PS C:\Users\kates> python -c "import caiman; print(version)" Traceback (most recent call last): File "", line 1, in NameError: name 'version' is not defined (caiman-test) PS C:\Users\kates> pip install git+https://github.com/kushalkolar/MESmerize.git Collecting git+https://github.com/kushalkolar/MESmerize.git Cloning https://github.com/kushalkolar/MESmerize.git to c:\users\kates\appdata\local\temp\pip-req-build-yh9rr9z9 Running command git clone --filter=blob:none --quiet https://github.com/kushalkolar/MESmerize.git 'C:\Users\kates\AppData\Local\Temp\pip-req-build-yh9rr9z9' warning: the following paths have collided (e.g. case-sensitive paths on a case-insensitive filesystem) and only one from the same colliding group is in the working tree:

'mesmerize/plotting/widgets/colormaps/Spectral.png'
'mesmerize/plotting/widgets/colormaps/spectral.png'

Resolved https://github.com/kushalkolar/MESmerize.git to commit cf7594643bb32c4e64d7d80f84f4b195812349e5 Preparing metadata (setup.py) ... done Collecting cycler==0.10.0 Using cached cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) Requirement already satisfied: dask>=1.1.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2022.2.1) Requirement already satisfied: future>=0.18.2 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (0.18.2) Requirement already satisfied: h5py~=2.10.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2.10.0) Requirement already satisfied: ipykernel>=4.10 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (6.9.1) Requirement already satisfied: ipython>=7.15.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (8.0.1) Requirement already satisfied: ipyparallel>=6.3 in 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gast-0.3.3-py2.py3-none-any.whl (9.7 kB) Collecting tensorflow Downloading tensorflow-2.8.0-cp38-cp38-win_amd64.whl (438.0 MB) ---------------------------------------- 438.0/438.0 MB 6.4 MB/s eta 0:00:00 Collecting flatbuffers>=1.12 Downloading flatbuffers-2.0-py2.py3-none-any.whl (26 kB) Collecting tensorflow-io-gcs-filesystem>=0.23.1 Downloading tensorflow_io_gcs_filesystem-0.24.0-cp38-cp38-win_amd64.whl (1.5 MB) ---------------------------------------- 1.5/1.5 MB 30.7 MB/s eta 0:00:00 Collecting libclang>=9.0.1 Downloading libclang-13.0.0-py2.py3-none-win_amd64.whl (13.9 MB) ---------------------------------------- 13.9/13.9 MB 13.1 MB/s eta 0:00:00 Collecting keras<2.9,>=2.8.0rc0 Downloading keras-2.8.0-py2.py3-none-any.whl (1.4 MB) ---------------------------------------- 1.4/1.4 MB 29.1 MB/s eta 0:00:00 Requirement already satisfied: gast>=0.2.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from tensorflow->nuset-lib->mesmerize==0.9.0) (0.4.0) Collecting tf-estimator-nightly==2.8.0.dev2021122109 Downloading tf_estimator_nightly-2.8.0.dev2021122109-py2.py3-none-any.whl (462 kB) ---------------------------------------- 462.5/462.5 KB 30.1 MB/s eta 0:00:00 Requirement already satisfied: opt-einsum>=2.3.2 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from tensorflow->nuset-lib->mesmerize==0.9.0) (3.3.0) Collecting lazy-object-proxy>=1.4.0 Downloading lazy_object_proxy-1.7.1-cp38-cp38-win_amd64.whl (22 kB) Requirement already satisfied: zipp>=0.5 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from importlib-metadata>=3.6->keyring->spyder==3.3.3->mesmerize==0.9.0) (3.7.0) Requirement already satisfied: attrs>=17.4.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from jsonschema>=2.6.0->hdmf<3,>=2.1.0->pynwb->mesmerize==0.9.0) (21.4.0) Requirement already satisfied: pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from jsonschema>=2.6.0->hdmf<3,>=2.1.0->pynwb->mesmerize==0.9.0) (0.18.1) Requirement already satisfied: importlib-resources>=1.4.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from jsonschema>=2.6.0->hdmf<3,>=2.1.0->pynwb->mesmerize==0.9.0) (5.4.0) Requirement already satisfied: pywin32>=1.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from jupyter-core>=4.6.0->jupyter-client<8.0->ipykernel>=4.10->mesmerize==0.9.0) (303) Requirement already satisfied: ruamel.yaml.clib>=0.2.6 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from ruamel.yaml>=0.15->hdmf<3,>=2.1.0->pynwb->mesmerize==0.9.0) (0.2.6) Requirement already satisfied: tensorboard-data-server<0.7.0,>=0.6.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (0.6.0) Requirement already satisfied: tensorboard-plugin-wit>=1.6.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (1.8.1) Requirement already satisfied: werkzeug>=0.11.15 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (2.0.3) Requirement already satisfied: google-auth<3,>=1.6.3 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (2.6.0) Requirement already satisfied: google-auth-oauthlib<0.5,>=0.4.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (0.4.6) Requirement already satisfied: pywinpty>=1.1.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from terminado>=0.8.3->notebook->jupyter->mesmerize==0.9.0) (2.0.2) Requirement already satisfied: argon2-cffi-bindings in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from argon2-cffi->notebook->jupyter->mesmerize==0.9.0) (21.2.0) Requirement already satisfied: webencodings in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from bleach->panel>=0.8.0->holoviews->mesmerize==0.9.0) (0.5.1) Requirement already satisfied: cachetools<6.0,>=2.0.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from google-auth<3,>=1.6.3->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (5.0.0) Requirement already satisfied: pyasn1-modules>=0.2.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from google-auth<3,>=1.6.3->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (0.2.8) Requirement already satisfied: rsa<5,>=3.1.4 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from google-auth<3,>=1.6.3->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (4.8) Requirement already satisfied: requests-oauthlib>=0.7.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (1.3.1) Requirement already satisfied: cffi>=1.0.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from argon2-cffi-bindings->argon2-cffi->notebook->jupyter->mesmerize==0.9.0) (1.15.0) Requirement already satisfied: pycparser in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi->notebook->jupyter->mesmerize==0.9.0) (2.21) Requirement already satisfied: pyasn1<0.5.0,>=0.4.6 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (0.4.8) Requirement already satisfied: oauthlib>=3.0.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (3.2.0) Building wheels for collected packages: mesmerize, scikit-image Building wheel for mesmerize (setup.py) ... done Created wheel for mesmerize: filename=mesmerize-0.9.0-py3-none-any.whl size=1001227 sha256=35d85314899e08d719705ca14f118303f8898389bb3e7c6309602b897f9a228c Stored in directory: C:\Users\kates\AppData\Local\Temp\pip-ephem-wheel-cache-nrb9yxam\wheels\d1\30\5f\e4337c98aa54515d1527d7632c9c0db5921d7f8d0950043e80 Building wheel for scikit-image (setup.py) ... error error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [490 lines of output] Partial import of skimage during the build process. Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage_shared\geometry.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage_shared\transform.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage_shared\interpolation.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\draw_draw.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature\corner_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature\censure_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature\orb_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature\brief_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_texture.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_hessian_det_appx.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_hoghistogram.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_cascade.cpp C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_haar.cpp Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_unwrap_1d.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_unwrap_2d.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_unwrap_3d.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_denoise_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_nl_means_denoising.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\filters\rank/core_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\filters\rank/generic_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\filters\rank/percentile_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\filters\rank/bilateral_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\future\graph_ncut_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\graph_spath.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\graph_mcp.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\graph\heap.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\io_plugins/_colormixer.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\io_plugins/_histograms.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_ccomp.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_find_contours_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_moments_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_marching_cubes_classic_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_marching_cubes_lewiner_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_pnpoly.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_watershed.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_skeletonize_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_convex_hull.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_greyreconstruct.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_extrema_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_skeletonize_3d_cy.cpp Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_extrema_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_flood_fill_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_max_tree.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\transform_hough_transform.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\transform_warps_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\transform_radon_transform.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\segmentation_felzenszwalb_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\segmentation_quickshift_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\segmentation_slic.c running bdist_wheel running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "skimage._shared.geometry" sources INFO: building extension "skimage._shared.transform" sources INFO: building extension "skimage._shared.interpolation" sources INFO: building extension "skimage.draw._draw" sources INFO: building extension "skimage.feature._cascade" sources INFO: building extension "skimage.feature.corner_cy" sources INFO: building extension "skimage.feature.censure_cy" sources INFO: building extension "skimage.feature.orb_cy" sources INFO: building extension "skimage.feature.brief_cy" sources INFO: building extension "skimage.feature._texture" sources INFO: building extension "skimage.feature._hessian_det_appx" sources INFO: building extension "skimage.feature._hoghistogram" sources INFO: building extension "skimage.feature._haar" sources INFO: building extension "skimage.restoration._unwrap_1d" sources INFO: building extension "skimage.restoration._unwrap_2d" sources INFO: building extension "skimage.restoration._unwrap_3d" sources INFO: building extension "skimage.restoration._denoise_cy" sources INFO: building extension "skimage.restoration._nl_means_denoising" sources INFO: building extension "skimage.filters.rank.core_cy" sources INFO: building extension "skimage.filters.rank.generic_cy" sources INFO: building extension "skimage.filters.rank.percentile_cy" sources INFO: building extension "skimage.filters.rank.bilateral_cy" sources INFO: building extension "skimage.future.graph._ncut_cy" sources INFO: building extension "skimage.graph._spath" sources INFO: building extension "skimage.graph._mcp" sources INFO: building extension "skimage.graph.heap" sources INFO: building extension "skimage.io._plugins._colormixer" sources INFO: building extension "skimage.io._plugins._histograms" sources INFO: building extension "skimage.measure._ccomp" sources INFO: building extension "skimage.measure._find_contours_cy" sources INFO: building extension "skimage.measure._moments_cy" sources INFO: building extension "skimage.measure._marching_cubes_classic_cy" sources INFO: building extension "skimage.measure._marching_cubes_lewiner_cy" sources INFO: building extension "skimage.measure._pnpoly" sources INFO: building extension "skimage.morphology._watershed" sources INFO: building extension "skimage.morphology._skeletonize_cy" sources INFO: building extension "skimage.morphology._convex_hull" sources INFO: building extension "skimage.morphology._greyreconstruct" sources INFO: building extension "skimage.morphology._max_tree" sources INFO: building extension "skimage.morphology._skeletonize_3d_cy" sources INFO: building extension "skimage.morphology._extrema_cy" sources INFO: building extension "skimage.morphology._flood_fill_cy" sources INFO: building extension "skimage.transform._hough_transform" sources INFO: building extension "skimage.transform._warps_cy" sources INFO: building extension "skimage.transform._radon_transform" sources INFO: building extension "skimage.segmentation._felzenszwalb_cy" sources INFO: building extension "skimage.segmentation._quickshift_cy" sources INFO: building extension "skimage.segmentation._slic" sources INFO: building extension "skimage.external.tifffile._tifffile" sources INFO: building data_files sources INFO: build_src: building npy-pkg config files C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\setuptools\command\install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_py creating build creating build\lib.win-amd64-3.8 creating build\lib.win-amd64-3.8\skimage copying skimage\conftest.py -> build\lib.win-amd64-3.8\skimage copying skimage\setup.py -> build\lib.win-amd64-3.8\skimage copying skimage_build.py -> build\lib.win-amd64-3.8\skimage copying skimage__init__.py -> build\lib.win-amd64-3.8\skimage creating build\lib.win-amd64-3.8\skimage\color copying skimage\color\adapt_rgb.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color\colorconv.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color\colorlabel.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color\delta_e.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color\rgb_colors.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color__init__.py -> build\lib.win-amd64-3.8\skimage\color creating build\lib.win-amd64-3.8\skimage\data copying skimage\data_binary_blobs.py -> build\lib.win-amd64-3.8\skimage\data copying skimage\data_detect.py -> build\lib.win-amd64-3.8\skimage\data copying skimage\data__init__.py -> build\lib.win-amd64-3.8\skimage\data creating build\lib.win-amd64-3.8\skimage\draw copying skimage\draw\draw.py -> build\lib.win-amd64-3.8\skimage\draw copying skimage\draw\draw3d.py -> build\lib.win-amd64-3.8\skimage\draw copying skimage\draw\setup.py -> build\lib.win-amd64-3.8\skimage\draw copying skimage\draw_random_shapes.py -> build\lib.win-amd64-3.8\skimage\draw copying skimage\draw__init__.py -> build\lib.win-amd64-3.8\skimage\draw creating build\lib.win-amd64-3.8\skimage\exposure copying skimage\exposure\exposure.py -> build\lib.win-amd64-3.8\skimage\exposure copying skimage\exposure\setup.py -> build\lib.win-amd64-3.8\skimage\exposure copying skimage\exposure_adapthist.py -> build\lib.win-amd64-3.8\skimage\exposure copying skimage\exposure__init__.py -> build\lib.win-amd64-3.8\skimage\exposure creating build\lib.win-amd64-3.8\skimage\external copying skimage\external\setup.py -> build\lib.win-amd64-3.8\skimage\external copying skimage\external\test_tifffile.py -> build\lib.win-amd64-3.8\skimage\external copying skimage\external__init__.py -> build\lib.win-amd64-3.8\skimage\external creating build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\blob.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\brief.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\censure.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\corner.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\haar.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\masked_register_translation.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\match.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\orb.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\peak.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\register_translation.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\setup.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\template.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\texture.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\util.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature_canny.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature_daisy.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature_hog.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature__init__.py -> build\lib.win-amd64-3.8\skimage\feature creating build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\edges.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\lpi_filter.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\ridges.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\setup.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\thresholding.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_gabor.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_gaussian.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_median.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_rank_order.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_unsharp_mask.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters__init__.py -> build\lib.win-amd64-3.8\skimage\filters creating build\lib.win-amd64-3.8\skimage\future copying skimage\future\manual_segmentation.py -> build\lib.win-amd64-3.8\skimage\future copying skimage\future\setup.py -> build\lib.win-amd64-3.8\skimage\future copying skimage\future__init__.py -> build\lib.win-amd64-3.8\skimage\future creating build\lib.win-amd64-3.8\skimage\graph copying skimage\graph\mcp.py -> build\lib.win-amd64-3.8\skimage\graph copying skimage\graph\setup.py -> build\lib.win-amd64-3.8\skimage\graph copying skimage\graph\spath.py -> build\lib.win-amd64-3.8\skimage\graph copying skimage\graph__init__.py -> build\lib.win-amd64-3.8\skimage\graph creating build\lib.win-amd64-3.8\skimage\io copying skimage\io\collection.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io\manage_plugins.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io\setup.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io\sift.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io\util.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io_image_stack.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io_io.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io__init__.py -> build\lib.win-amd64-3.8\skimage\io creating build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\block.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\entropy.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\fit.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\pnpoly.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\profile.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\setup.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\simple_metrics.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_find_contours.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_label.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_marching_cubes_classic.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_marching_cubes_lewiner.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_marching_cubes_lewiner_luts.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_moments.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_polygon.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_regionprops.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_structural_similarity.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure__init__.py -> build\lib.win-amd64-3.8\skimage\measure creating build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\binary.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\convex_hull.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\extrema.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\grey.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\greyreconstruct.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\max_tree.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\misc.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\selem.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\setup.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\watershed.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology_flood_fill.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology_skeletonize.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology_skeletonize_3d.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology_util.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology__init__.py -> build\lib.win-amd64-3.8\skimage\morphology creating build\lib.win-amd64-3.8\skimage\novice copying skimage\novice_novice.py -> build\lib.win-amd64-3.8\skimage\novice copying skimage\novice__init__.py -> build\lib.win-amd64-3.8\skimage\novice creating build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\deconvolution.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\inpaint.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\non_local_means.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\setup.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\uft.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\unwrap.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration_cycle_spin.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration_denoise.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration__init__.py -> build\lib.win-amd64-3.8\skimage\restoration creating build\lib.win-amd64-3.8\skimage\scripts copying skimage\scripts\skivi.py -> build\lib.win-amd64-3.8\skimage\scripts copying skimage\scripts__init__.py -> build\lib.win-amd64-3.8\skimage\scripts creating build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\active_contour_model.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\boundaries.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\morphsnakes.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\random_walker_segmentation.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\setup.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\slic_superpixels.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_chan_vese.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_clear_border.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_felzenszwalb.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_join.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_quickshift.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation__init__.py -> build\lib.win-amd64-3.8\skimage\segmentation creating build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\finite_radon_transform.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\histogram_matching.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\hough_transform.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\integral.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\pyramids.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\radon_transform.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\seam_carving.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\setup.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform_geometric.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform_warps.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform__init__.py -> build\lib.win-amd64-3.8\skimage\transform creating build\lib.win-amd64-3.8\skimage\util copying skimage\util\apply_parallel.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\arraycrop.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\dtype.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\lookfor.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\noise.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\shape.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\unique.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util_invert.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util_montage.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util_regular_grid.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util__init__.py -> build\lib.win-amd64-3.8\skimage\util creating build\lib.win-amd64-3.8\skimage\viewer copying skimage\viewer\qt.py -> build\lib.win-amd64-3.8\skimage\viewer copying skimage\viewer__init__.py -> build\lib.win-amd64-3.8\skimage\viewer creating build\lib.win-amd64-3.8\skimage_shared copying skimage_shared\setup.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared\testing.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared\utils.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared\version_requirements.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared_geometry.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared_tempfile.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared_warnings.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared__init__.py -> build\lib.win-amd64-3.8\skimage_shared creating build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests\test_adapt_rgb.py -> build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests\test_colorconv.py -> build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests\test_colorlabel.py -> build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests\test_delta_e.py -> build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests__init__.py -> build\lib.win-amd64-3.8\skimage\color\tests creating build\lib.win-amd64-3.8\skimage\data\tests copying skimage\data\tests\test_data.py -> build\lib.win-amd64-3.8\skimage\data\tests copying skimage\data\tests__init__.py -> build\lib.win-amd64-3.8\skimage\data\tests creating build\lib.win-amd64-3.8\skimage\draw\tests copying skimage\draw\tests\test_draw.py -> build\lib.win-amd64-3.8\skimage\draw\tests copying skimage\draw\tests\test_draw3d.py -> build\lib.win-amd64-3.8\skimage\draw\tests copying skimage\draw\tests\test_random_shapes.py -> build\lib.win-amd64-3.8\skimage\draw\tests copying skimage\draw\tests__init__.py -> build\lib.win-amd64-3.8\skimage\draw\tests creating build\lib.win-amd64-3.8\skimage\exposure\tests copying skimage\exposure\tests\test_exposure.py -> build\lib.win-amd64-3.8\skimage\exposure\tests copying skimage\exposure\tests__init__.py -> build\lib.win-amd64-3.8\skimage\exposure\tests creating build\lib.win-amd64-3.8\skimage\external\tifffile copying skimage\external\tifffile\tifffile.py -> build\lib.win-amd64-3.8\skimage\external\tifffile copying skimage\external\tifffile__init.py -> build\lib.win-amd64-3.8\skimage\external\tifffile creating build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_blob.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_brief.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_canny.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_cascade.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_censure.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_corner.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_daisy.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_haar.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_hog.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_masked_register_translation.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_match.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_orb.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_peak.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_register_translation.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_template.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_texture.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_util.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests__init.py -> build\lib.win-amd64-3.8\skimage\feature\tests creating build\lib.win-amd64-3.8\skimage\filters\rank copying skimage\filters\rank\bilateral.py -> build\lib.win-amd64-3.8\skimage\filters\rank copying skimage\filters\rank\generic.py -> build\lib.win-amd64-3.8\skimage\filters\rank copying skimage\filters\rank_percentile.py -> build\lib.win-amd64-3.8\skimage\filters\rank copying skimage\filters\rank__init.py -> build\lib.win-amd64-3.8\skimage\filters\rank creating build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_edges.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_gabor.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_gaussian.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_lpi_filter.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_median.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_ridges.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_thresholding.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_unsharp_mask.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests__init.py -> build\lib.win-amd64-3.8\skimage\filters\tests creating build\lib.win-amd64-3.8\skimage\filters\rank\tests copying skimage\filters\rank\tests\test_rank.py -> build\lib.win-amd64-3.8\skimage\filters\rank\tests copying skimage\filters\rank\tests__init.py -> build\lib.win-amd64-3.8\skimage\filters\rank\tests creating build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph\graph_cut.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph\graph_merge.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph\rag.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph\setup.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph_ncut.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph__init.py -> build\lib.win-amd64-3.8\skimage\future\graph creating build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_anisotropy.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_connect.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_flexible.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_heap.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_mcp.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_spath.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests__init.py -> build\lib.win-amd64-3.8\skimage\graph\tests creating build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_collection.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_colormixer.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_fits.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_histograms.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_imageio.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_imread.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_io.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_mpl_imshow.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_multi_image.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_pil.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_plugin.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_plugin_util.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_sift.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_simpleitk.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_tifffile.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests__init.py -> build\lib.win-amd64-3.8\skimage\io\tests creating build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\fits_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\gdal_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\gtk_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\imageio_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\imread_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\matplotlib_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\pil_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\qt_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\q_color_mixer.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\q_histogram.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\simpleitk_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\skivi.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\tifffile_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\util.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins__init__.py -> build\lib.win-amd64-3.8\skimage\io_plugins creating build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_block.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_entropy.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_find_contours.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_fit.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_marching_cubes.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_moments.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_pnpoly.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_polygon.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_profile.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_regionprops.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_simple_metrics.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_structural_similarity.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\init__.py -> build\lib.win-amd64-3.8\skimage\measure\tests creating build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_binary.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_ccomp.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_convex_hull.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_extrema.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_flood_fill.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_grey.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_max_tree.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_misc.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_reconstruction.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_selem.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_skeletonize.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_skeletonize_3d.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_watershed.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\init__.py -> build\lib.win-amd64-3.8\skimage\morphology\tests creating build\lib.win-amd64-3.8\skimage\novice\tests copying skimage\novice\tests\test_novice.py -> build\lib.win-amd64-3.8\skimage\novice\tests copying skimage\novice\tests\init.py -> build\lib.win-amd64-3.8\skimage\novice\tests creating build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\test_denoise.py -> build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\test_inpaint.py -> build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\test_restoration.py -> build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\test_unwrap.py -> build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\init__.py -> build\lib.win-amd64-3.8\skimage\restoration\tests creating build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_active_contour_model.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_boundaries.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_chan_vese.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_clear_border.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_felzenszwalb.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_join.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_morphsnakes.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_quickshift.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_random_walker.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_slic.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\init__.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests creating build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_finite_radon_transform.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_geometric.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_histogram_matching.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_hough_transform.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_integral.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_pyramids.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_radon_transform.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_seam_carving.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_warps.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\init.py -> build\lib.win-amd64-3.8\skimage\transform\tests creating build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_apply_parallel.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_arraycrop.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_arraypad.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_dtype.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_invert.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_montage.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_random_noise.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_regular_grid.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_shape.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_unique_rows.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\init.py -> build\lib.win-amd64-3.8\skimage\util\tests creating build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\base.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\linetool.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\painttool.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\recttool.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\init__.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools creating build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\base.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\canny.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\color_histogram.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\crop.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\labelplugin.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\lineprofile.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\measure.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\overlayplugin.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\plotplugin.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\init__.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins creating build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_plugins.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_tools.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_utils.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_viewer.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_widgets.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\init.py -> build\lib.win-amd64-3.8\skimage\viewer\tests creating build\lib.win-amd64-3.8\skimage\viewer\utils copying skimage\viewer\utils\canvas.py -> build\lib.win-amd64-3.8\skimage\viewer\utils copying skimage\viewer\utils\core.py -> build\lib.win-amd64-3.8\skimage\viewer\utils copying skimage\viewer\utils\dialogs.py -> build\lib.win-amd64-3.8\skimage\viewer\utils copying skimage\viewer\utils\init.py -> build\lib.win-amd64-3.8\skimage\viewer\utils creating build\lib.win-amd64-3.8\skimage\viewer\viewers copying skimage\viewer\viewers\core.py -> build\lib.win-amd64-3.8\skimage\viewer\viewers copying skimage\viewer\viewers\init.py -> build\lib.win-amd64-3.8\skimage\viewer\viewers creating build\lib.win-amd64-3.8\skimage\viewer\widgets copying skimage\viewer\widgets\core.py -> build\lib.win-amd64-3.8\skimage\viewer\widgets copying skimage\viewer\widgets\history.py -> build\lib.win-amd64-3.8\skimage\viewer\widgets copying skimage\viewer\widgets\init__.py -> build\lib.win-amd64-3.8\skimage\viewer\widgets creating build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_geometry.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_interpolation.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_safe_as_int.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_testing.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_utils.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_version_requirements.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\init__.py -> build\lib.win-amd64-3.8\skimage_shared\tests running build_ext INFO: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils INFO: customize MSVCCompiler INFO: customize MSVCCompiler using ConditionalOpenMP INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (/O2) error: Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/ INFO: CCompilerOpt.cache_flush[817] : write cache to path -> C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\build\temp.win-amd64-3.8\Release\ccompiler_opt_cache_ext.py [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for scikit-image Running setup.py clean for scikit-image Successfully built mesmerize Failed to build scikit-image Installing collected packages: tk, tf-estimator-nightly, tcl, snowballstemmer, rope, pywin32-ctypes, mccabe, libclang, keras, flatbuffers, alabaster, xmltodict, toml, tensorflow-io-gcs-filesystem, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, qtap, PyQt5, pyflakes, pycodestyle, numpy, llvmlite, lazy-object-proxy, isort, imagesize, graphviz, docutils, cycler, chardet, babel, sphinx, opencv-contrib-python, numexpr, numba, matplotlib, keyring, astroid, tables, sk-video, seaborn, scikit-learn, scikit-image, qtawesome, pylint, numpydoc, tensorflow, spyder-kernels, spyder, nuset-lib, mesmerize Attempting uninstall: PyQt5 Found existing installation: PyQt5 5.12.3 Uninstalling PyQt5-5.12.3: Successfully uninstalled PyQt5-5.12.3 Attempting uninstall: numpy Found existing installation: numpy 1.22.2 Uninstalling numpy-1.22.2: Successfully uninstalled numpy-1.22.2 Attempting uninstall: cycler Found existing installation: cycler 0.11.0 Uninstalling cycler-0.11.0: Successfully uninstalled cycler-0.11.0 Attempting uninstall: matplotlib Found existing installation: matplotlib 3.5.1 Uninstalling matplotlib-3.5.1: Successfully uninstalled matplotlib-3.5.1 Attempting uninstall: scikit-learn Found existing installation: scikit-learn 1.0.2 Uninstalling scikit-learn-1.0.2: Successfully uninstalled scikit-learn-1.0.2 Attempting uninstall: scikit-image Found existing installation: scikit-image 0.19.2 Uninstalling scikit-image-0.19.2: Successfully uninstalled scikit-image-0.19.2 Running setup.py install for scikit-image ... error error: subprocess-exited-with-error

× Running setup.py install for scikit-image did not run successfully. │ exit code: 1 ╰─> [12 lines of output] Traceback (most recent call last): File "", line 2, in File "", line 34, in File "C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\setup.py", line 164, in import(lib) File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\scipy__init.py", line 136, in from . import _distributor_init File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\scipy_distributor_init.py", line 59, in WinDLL(os.path.abspath(filename)) File "C:\Users\kates\anaconda3\envs\caiman-test\lib\ctypes\init.py", line 373, in init__ self._handle = _dlopen(self._name, mode) FileNotFoundError: Could not find module 'C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\scipy.libs\libbanded5x.TNNMG3IXHGJK7NIBT5J6YPEO5XWTOQAJ.gfortran-win_amd64.dll' (or one of its dependencies). Try using the full path with constructor syntax. [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. WARNING: No metadata found in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages Rolling back uninstall of scikit-image Moving to c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages\doc\ext\ from C:\Users\kates\anaconda3\envs\caiman-test\Lib\site-packages\doc\~xt Moving to c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages\scikit_image-0.19.2.dist-info\ from C:\Users\kates\anaconda3\envs\caiman-test\Lib\site-packages\~cikit_image-0.19.2.dist-info Moving to c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages\skimage\ from C:\Users\kates\anaconda3\envs\caiman-test\Lib\site-packages\~kimage Moving to c:\users\kates\anaconda3\envs\caiman-test\scripts\skivi-script.py from C:\Users\kates\AppData\Local\Temp\pip-uninstall-rdwqu2h9\skivi-script.py Moving to c:\users\kates\anaconda3\envs\caiman-test\scripts\skivi.exe from C:\Users\kates\AppData\Local\Temp\pip-uninstall-rdwqu2h9\skivi.exe error: legacy-install-failure

× Encountered error while trying to install package. ╰─> scikit-image

note: This is an issue with the package mentioned above, not pip. hint: See above for output from the failure. (caiman-test) PS C:\Users\kates>

kushalkolar commented 2 years ago

Can you try:

mamba install scikit-image

and then again:

pip install git+https://github.com/kushalkolar/MESmerize.git

It might be easier for you to use the Mesmerize VM on Windows if that's a viable option for you.

katesal327 commented 2 years ago

installed successfully...now what should I do?

kushalkolar commented 2 years ago

launch mesmerize and see if you don't get the issue with importing caiman

katesal327 commented 2 years ago

(caiman-test) PS C:\Users\kates> mesmerize Traceback (most recent call last): File "C:\Users\kates\anaconda3\envs\caiman-test\lib\runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "C:\Users\kates\anaconda3\envs\caiman-test\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\Users\kates\anaconda3\envs\caiman-test\Scripts\mesmerize.exe__main.py", line 4, in File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\mesmerize__init.py", line 1, in from .analysis import * File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\mesmerize\analysis\init__.py", line 1, in from .data_types import Transmission File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\mesmerize\analysis\data_types.py", line 25, in from ..common.utils import HdfTools, draw_graph File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\mesmerize\common\init.py", line 13, in from .configuration import get_sys_config, console_history_path File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\mesmerize\common\configuration.py", line 35, in import caiman File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\caiman\init.py", line 4, in from .base.movies import movie, load, load_movie_chain File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\caiman\base\movies.py", line 27, in import scipy.ndimage File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\scipy\init.py", line 136, in from . import _distributor_init File "C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\scipy_distributor_init.py", line 59, in WinDLL(os.path.abspath(filename)) File "C:\Users\kates\anaconda3\envs\caiman-test\lib\ctypes\init.py", line 373, in init__ self._handle = _dlopen(self._name, mode) FileNotFoundError: Could not find module 'C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\scipy.libs\libbanded5x.TNNMG3IXHGJK7NIBT5J6YPEO5XWTOQAJ.gfortran-win_amd64.dll' (or one of its dependencies). Try using the full path with constructor syntax. (caiman-test) PS C:\Users\kates>

katesal327 commented 2 years ago

didn't work from caiman-test environment

kushalkolar commented 2 years ago

Seems like the pip install removed some pre-compiled objects for some dependencies, reinstalling caiman in that env should get them back:

mamba install caiman -c conda-forge
katesal327 commented 2 years ago

yeah not sure i keep getting new errors everytime...

              __    __    __    __
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███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ _ / / _/ _/ _/ \ o _, / _/ ___/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝

    mamba (0.7.6) supported by @QuantStack

    GitHub:  https://github.com/mamba-org/mamba
    Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

Looking for: ['caiman']

pkgs/r/win-64 [====================] (00m:00s) No change pkgs/main/win-64 [====================] (00m:00s) No change pkgs/main/noarch [====================] (00m:00s) No change pkgs/msys2/noarch [====================] (00m:00s) No change pkgs/r/noarch [====================] (00m:00s) No change conda-forge/win-64 [====================] (00m:00s) No change pkgs/msys2/win-64 [====================] (00m:00s) No change conda-forge/noarch [====================] (00m:00s) No change Encountered problems while solving. Problem: package caiman-1.9.7-py38h5d928e2_0 requires python >=3.8,<3.9.0a0, but none of the providers can be installed

(base) PS C:\Users\kates> pip install git+https://github.com/kushalkolar/MESmerize.git Collecting git+https://github.com/kushalkolar/MESmerize.git Cloning https://github.com/kushalkolar/MESmerize.git to c:\users\kates\appdata\local\temp\pip-req-build-6ewdb8ml Running command git clone -q https://github.com/kushalkolar/MESmerize.git 'C:\Users\kates\AppData\Local\Temp\pip-req-build-6ewdb8ml' warning: the following paths have collided (e.g. case-sensitive paths on a case-insensitive filesystem) and only one from the same colliding group is in the working tree:

'mesmerize/plotting/widgets/colormaps/Spectral.png'
'mesmerize/plotting/widgets/colormaps/spectral.png'

Resolved https://github.com/kushalkolar/MESmerize.git to commit 6f4d0d5750b49856adc1dbe58c82be11a4399d8f Requirement already satisfied: cycler==0.10.0 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (0.10.0) Requirement already satisfied: dask>=1.1.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (2021.10.0) Requirement already satisfied: future>=0.18.2 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (0.18.2) Collecting h5py~=2.10.0 Using cached h5py-2.10.0.tar.gz (301 kB) Requirement already satisfied: ipykernel>=4.10 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (6.4.1) Requirement already satisfied: ipython>=7.15.0 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (7.29.0) Collecting ipyparallel>=6.3 Using cached ipyparallel-8.2.0-py3-none-any.whl (297 kB) Requirement already satisfied: MarkupSafe>=1.1.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (1.1.1) Collecting matplotlib<=3.2.1 Using cached matplotlib-3.2.1.tar.gz (40.3 MB) Collecting opencv-contrib-python>=4.2 Using cached opencv_contrib_python-4.5.5.62-cp36-abi3-win_amd64.whl (42.2 MB) Collecting opencv-python>=4.2 Using cached opencv_python-4.5.5.62-cp36-abi3-win_amd64.whl (35.4 MB) Requirement already satisfied: pandas in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (1.3.4) Requirement already satisfied: Pillow>=5.4.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (8.4.0) Requirement already satisfied: psutil in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (5.8.0) ERROR: Could not find a version that satisfies the requirement PyQt5<=5.12,>=5.9.2 (from mesmerize) (from versions: 5.12.3, 5.14.0, 5.14.1, 5.14.2, 5.15.0, 5.15.1, 5.15.2, 5.15.3, 5.15.4, 5.15.5, 5.15.6) ERROR: No matching distribution found for PyQt5<=5.12,>=5.9.2 (base) PS C:\Users\kates> conda install PyQt5 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

Current channels:

To search for alternate channels that may provide the conda package you're looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

(base) PS C:\Users\kates> pip install pyqt5 Collecting pyqt5 Downloading PyQt5-5.15.6-cp36-abi3-win_amd64.whl (6.7 MB) |████████████████████████████████| 6.7 MB 6.8 MB/s Collecting PyQt5-sip<13,>=12.8 Downloading PyQt5_sip-12.9.1-cp39-cp39-win_amd64.whl (77 kB) |████████████████████████████████| 77 kB 5.5 MB/s Collecting PyQt5-Qt5>=5.15.2 Downloading PyQt5_Qt5-5.15.2-py3-none-win_amd64.whl (50.1 MB) |████████████████████████████████| 50.1 MB 6.4 MB/s Installing collected packages: PyQt5-sip, PyQt5-Qt5, pyqt5 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. spyder 5.1.5 requires pyqtwebengine<5.13, which is not installed. spyder 5.1.5 requires pyqt5<5.13, but you have pyqt5 5.15.6 which is incompatible. Successfully installed PyQt5-Qt5-5.15.2 PyQt5-sip-12.9.1 pyqt5-5.15.6 (base) PS C:\Users\kates> pip install git+https://github.com/kushalkolar/MESmerize.git Collecting git+https://github.com/kushalkolar/MESmerize.git Cloning https://github.com/kushalkolar/MESmerize.git to c:\users\kates\appdata\local\temp\pip-req-build-gpyvasrm Running command git clone -q https://github.com/kushalkolar/MESmerize.git 'C:\Users\kates\AppData\Local\Temp\pip-req-build-gpyvasrm' warning: the following paths have collided (e.g. case-sensitive paths on a case-insensitive filesystem) and only one from the same colliding group is in the working tree:

'mesmerize/plotting/widgets/colormaps/Spectral.png'
'mesmerize/plotting/widgets/colormaps/spectral.png'

Resolved https://github.com/kushalkolar/MESmerize.git to commit 6f4d0d5750b49856adc1dbe58c82be11a4399d8f Requirement already satisfied: cycler==0.10.0 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (0.10.0) Requirement already satisfied: dask>=1.1.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (2021.10.0) Requirement already satisfied: future>=0.18.2 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (0.18.2) Collecting h5py~=2.10.0 Using cached h5py-2.10.0.tar.gz (301 kB) Requirement already satisfied: ipykernel>=4.10 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (6.4.1) Requirement already satisfied: ipython>=7.15.0 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (7.29.0) Collecting ipyparallel>=6.3 Using cached ipyparallel-8.2.0-py3-none-any.whl (297 kB) Requirement already satisfied: MarkupSafe>=1.1.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (1.1.1) Collecting matplotlib<=3.2.1 Using cached matplotlib-3.2.1.tar.gz (40.3 MB) Collecting opencv-contrib-python>=4.2 Using cached opencv_contrib_python-4.5.5.62-cp36-abi3-win_amd64.whl (42.2 MB) Collecting opencv-python>=4.2 Using cached opencv_python-4.5.5.62-cp36-abi3-win_amd64.whl (35.4 MB) Requirement already satisfied: pandas in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (1.3.4) Requirement already satisfied: Pillow>=5.4.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (8.4.0) Requirement already satisfied: psutil in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (5.8.0) ERROR: Could not find a version that satisfies the requirement PyQt5<=5.12,>=5.9.2 (from mesmerize) (from versions: 5.12.3, 5.14.0, 5.14.1, 5.14.2, 5.15.0, 5.15.1, 5.15.2, 5.15.3, 5.15.4, 5.15.5, 5.15.6) ERROR: No matching distribution found for PyQt5<=5.12,>=5.9.2 (base) PS C:\Users\kates>

kushalkolar commented 2 years ago

You are not the right environment, you're in the base environment.

# activate the caiman-test environment which you were using
conda activate caiman-test
# reinstall caiman to get the compiled dependencies
mamba install caiman -c conda-forge
katesal327 commented 2 years ago

yeah, I tried that too...didn't work. not sure why the normal instructions aren't working for me.

kushalkolar commented 2 years ago

@EricThomson has written a detailed guide on installing mesmerize & caiman on windows, I'd try this: https://github.com/EricThomson/mesmerize_setup

If you're new to python and virtual envs I would first try out Mesmerize with the VM.

katesal327 commented 2 years ago

thanks, I am downloading the VM to try it...will likely be switching to/using a linux machine so I won't be able to use the VM forever.

kushalkolar commented 2 years ago

Python environments are much easier to manage in Linux! Feel free to post an issue if you have problems there as well.

katesal327 commented 2 years ago

yes, indeed. hope to move there

katesal327 commented 2 years ago

I suggest you add @EricThomson instructions to the docs for CaImAn installation. It worked!

kushalkolar commented 2 years ago

Glad to hear that it worked! Yea we've been working on updating the installation instructions for py3.8, the installation is always the hardest part when working with Python applications.

EricThomson commented 2 years ago

Glad it worked! It should be much simpler soon. I plan to re-write that guide in the next couple of weeks.

kushalkolar commented 2 years ago

@kas5dv closing this, feel free to open another issue if you encounter other problems.