Closed katesal327 closed 2 years ago
Did you install caiman into the same environment as mesmerize
yes, I did. trying again now
installed when mesmerize environment was activated. the path to both caiman and mesmerize is this on my C:
/Users/kates/anaconda3/env/ caiman mesmerize
Is that correct? caiman_data is in /Users/kates/
You also need to run the caimanmanager.py after installing caiman
Both caiman and mesmerize have to be installed in the same environment
right, meaning I am installing caiman within the mesmerize environment, correct?
(mesmerize) C:\Users\kates>python C:\Users\kates\anaconda3\envs\caiman\bin\caimanmanager.py install
Traceback (most recent call last):
File "C:\Users\kates\anaconda3\envs\caiman\bin\caimanmanager.py", line 16, in
my current error
What do you get when you open ipython and run import caiman
ModuleNotFoundError Traceback (most recent call last)
~\AppData\Local\Temp/ipykernel_17312/156116295.py in
ModuleNotFoundError: No module named 'caiman'
How did you try installing caiman?
the package install according to the documentation
From: Kushal Kolar @.> Sent: Monday, February 28, 2022 1:06 PM To: kushalkolar/MESmerize @.> Cc: Kathryn Salvati @.>; Author @.> Subject: Re: [kushalkolar/MESmerize] caiman package not found (Issue #85)
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How did you try installing caiman?
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Can you create a new environment and install caiman, and then try to import caiman. Outline the exact steps you're taking.
will do:
1) This process is the same on every operating system Follow this process if you won’t need to work with the CaImAn sources and instead wish to use it as a library (the demos still work this way, and you can use/modify them). You do not need a compiler for this route. You should not download the sources (with git or otherwise) for this route. This route also sets environment variables for you (skip that section below) Download and install Anaconda (Python 3.x) http://docs.continuum.io/anaconda/install. Allow the installer to modify your PATH variable Install mamba into your base environment, with ‘conda install -n base -c conda-forge mamba’ Create a new environment with the caiman package from conda-forge: If you are installing on Windows, use the conda enabled shell (under “Anaconda” in your programs menu) rather than powershell or a generic prompt mamba create -n caiman -c conda-forge caiman conda activate caiman
caiman is now installed...new to python...what do you mean by import?
Run ipython in that environment and run "import caiman"
By outlining your steps I mean can you list out the steps exactly as you are typing them in, and where you're typing them in. Since you're unable to import caiman I'm guessing that you're making a simple mistake somewhere that I'm trying to pin down.
C:\Users\kates>set OPENBLAS_NUM_THREADS=1
Note: you may need to restart the kernel to use updated packages.
ModuleNotFoundError Traceback (most recent call last)
~\AppData\Local\Temp/ipykernel_5464/156116295.py in
ModuleNotFoundError: No module named 'caiman'
Can you please run exactly this in the anaconda shell and either provide a screenshot or copy paste the entire output.
mamba create -n caiman-test -c conda-forge caiman
conda activate caiman-test
python3 -c "import caiman;print(caiman.__version__)"
(base) PS C:\Users\kates> mamba create -n caiman-test -c conda-forge caiman
__ __ __ __
/ \ / \ / \ / \
/ \/ \/ \/ \
███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ _ / / _/ _/ _/ \ o _, / _/ ___/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝
mamba (0.7.6) supported by @QuantStack
GitHub: https://github.com/mamba-org/mamba
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Looking for: ['caiman']
pkgs/r/win-64 [====================] (00m:00s) No change pkgs/main/noarch [====================] (00m:00s) No change pkgs/main/win-64 [====================] (00m:00s) No change pkgs/msys2/win-64 [====================] (00m:00s) No change pkgs/msys2/noarch [====================] (00m:00s) No change conda-forge/win-64 [====================] (00m:00s) No change pkgs/r/noarch [====================] (00m:00s) No change conda-forge/noarch [====================] (00m:02s) Done Transaction
Prefix: C:\Users\kates\anaconda3\envs\caiman-test
Updating specs:
caiman
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Summary:
Install: 266 packages
Total download: 0 B
Confirm changes: [Y/n] y
Downloading and Extracting Packages keras-applications-1 | 30 KB | ####################################################################################################################################################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: | Enabling notebook extension jupyter-js-widgets/extension...
done #
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(base) PS C:\Users\kates> conda activate caiman-test
(caiman-test) PS C:\Users\kates> python3 -c "import caiman; print(caiman.version)"
Python was not found; run without arguments to install from the Microsoft Store, or disable this shortcut from Settings > Manage App Execution Aliases.
(caiman-test) PS C:\Users\kates> python3 -c
Python was not found; run without arguments to install from the Microsoft Store, or disable this shortcut from Settings > Manage App Execution Aliases.
(caiman-test) PS C:\Users\kates> python -c "import caiman; print(caiman.version)"
Traceback (most recent call last):
File "
(caiman-test) PS C:\Users\kates> python -c "import caiman; print(version)"
Traceback (most recent call last):
File "
Ok looks like you've gotten caiman installed in that environment, not sure why the version string doesn't show up.
Can you now try this in the same caiman-test
environment:
pip install git+https://github.com/kushalkolar/MESmerize.git
(base) PS C:\Users\kates> mamba create -n caiman-test -c conda-forge caiman
__ __ __ __
/ \ / \ / \ / \
/ \/ \/ \/ \
███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ _ / / _/ _/ _/ \ o _, / _/ ___/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝
mamba (0.7.6) supported by @QuantStack
GitHub: https://github.com/mamba-org/mamba
Twitter: https://twitter.com/QuantStack
█████████████████████████████████████████████████████████████
Looking for: ['caiman']
pkgs/r/win-64 [====================] (00m:00s) No change pkgs/main/noarch [====================] (00m:00s) No change pkgs/main/win-64 [====================] (00m:00s) No change pkgs/msys2/win-64 [====================] (00m:00s) No change pkgs/msys2/noarch [====================] (00m:00s) No change conda-forge/win-64 [====================] (00m:00s) No change pkgs/r/noarch [====================] (00m:00s) No change conda-forge/noarch [====================] (00m:02s) Done Transaction
Prefix: C:\Users\kates\anaconda3\envs\caiman-test
Updating specs:
caiman
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conda-forge/noarch Cached pyparsing 3.0.7 pyhd8ed1ab_0 conda-forge/noarch Cached pyqt 5.12.3 py38haa244fe_8 conda-forge/win-64 Cached pyqt-impl 5.12.3 py38h885f38d_8 conda-forge/win-64 Cached pyqt5-sip 4.19.18 py38h885f38d_8 conda-forge/win-64 Cached pyqtchart 5.12 py38h885f38d_8 conda-forge/win-64 Cached pyqtgraph 0.12.3 pyhd8ed1ab_0 conda-forge/noarch Cached pyqtwebengine 5.12.1 py38h885f38d_8 conda-forge/win-64 Cached pyreadline 2.1 py38haa244fe_1005 conda-forge/win-64 Cached pyrsistent 0.18.1 py38h294d835_0 conda-forge/win-64 Cached pysocks 1.7.1 py38haa244fe_4 conda-forge/win-64 Cached python 3.8.12 h7840368_2_cpython conda-forge/win-64 Cached python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge/noarch Cached python_abi 3.8 2_cp38 conda-forge/win-64 Cached pytz 2021.3 pyhd8ed1ab_0 conda-forge/noarch Cached pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge/noarch Cached pyviz_comms 2.1.0 pyhd8ed1ab_0 conda-forge/noarch Cached pywavelets 1.2.0 py38h6f4d8f0_1 conda-forge/win-64 Cached pywin32 303 py38h294d835_0 conda-forge/win-64 Cached pywinpty 2.0.2 py38hd3f51b4_0 conda-forge/win-64 Cached pyyaml 6.0 py38h294d835_3 conda-forge/win-64 Cached pyzmq 22.3.0 py38h09162b1_1 conda-forge/win-64 Cached qt 5.12.9 h5909a2a_4 conda-forge/win-64 Cached qtconsole 5.2.2 pyhd8ed1ab_1 conda-forge/noarch Cached qtconsole-base 5.2.2 pyhd8ed1ab_1 conda-forge/noarch Cached qtpy 2.0.1 pyhd8ed1ab_0 conda-forge/noarch Cached requests 2.27.1 pyhd8ed1ab_0 conda-forge/noarch Cached requests-oauthlib 1.3.1 pyhd8ed1ab_0 conda-forge/noarch Cached rsa 4.8 pyhd8ed1ab_0 conda-forge/noarch Cached ruamel.yaml 0.17.21 py38h294d835_0 conda-forge/win-64 Cached ruamel.yaml.clib 0.2.6 py38h294d835_0 conda-forge/win-64 Cached scikit-image 0.19.2 py38h5d928e2_0 conda-forge/win-64 Cached scikit-learn 1.0.2 py38hb60ee80_0 conda-forge/win-64 Cached scipy 1.8.0 py38ha1292f7_1 conda-forge/win-64 Cached send2trash 1.8.0 pyhd8ed1ab_0 conda-forge/noarch Cached setuptools 60.9.3 py38haa244fe_0 conda-forge/win-64 Cached six 1.16.0 pyh6c4a22f_0 conda-forge/noarch Cached slicerator 1.0.0 py_0 conda-forge/noarch Cached snappy 1.1.8 ha925a31_3 conda-forge/win-64 Cached sqlite 3.37.2 h2bbff1b_0 pkgs/main/win-64 Cached stack_data 0.2.0 pyhd8ed1ab_0 conda-forge/noarch Cached tbb 2021.5.0 h2d74725_0 conda-forge/win-64 Cached tensorboard 2.8.0 pyhd8ed1ab_1 conda-forge/noarch Cached tensorboard-data-server 0.6.0 py38haa244fe_1 conda-forge/win-64 Cached tensorboard-plugin-wit 1.8.1 pyhd8ed1ab_0 conda-forge/noarch Cached tensorflow 2.3.0 mkl_py38h8c0d9a2_0 pkgs/main/win-64 Cached tensorflow-base 2.3.0 eigen_py38h75a453f_0 pkgs/main/win-64 Cached tensorflow-estimator 2.6.0 pyh7b7c402_0 pkgs/main/noarch Cached termcolor 1.1.0 py_2 conda-forge/noarch Cached terminado 0.13.1 py38haa244fe_0 conda-forge/win-64 Cached testpath 0.6.0 pyhd8ed1ab_0 conda-forge/noarch Cached threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge/noarch Cached tifffile 2022.2.9 pyhd8ed1ab_0 conda-forge/noarch Cached tk 8.6.12 h8ffe710_0 conda-forge/win-64 Cached tomli 2.0.1 pyhd8ed1ab_0 conda-forge/noarch Cached toolz 0.11.2 pyhd8ed1ab_0 conda-forge/noarch Cached tornado 6.1 py38h294d835_2 conda-forge/win-64 Cached tqdm 4.63.0 pyhd8ed1ab_0 conda-forge/noarch Cached traitlets 5.1.1 pyhd8ed1ab_0 conda-forge/noarch Cached typed-ast 1.5.2 py38h294d835_0 conda-forge/win-64 Cached typing-extensions 4.1.1 hd8ed1ab_0 conda-forge/noarch Cached typing_extensions 4.1.1 pyha770c72_0 conda-forge/noarch Cached ucrt 10.0.20348.0 h57928b3_0 conda-forge/win-64 Cached unicodedata2 14.0.0 py38h294d835_0 conda-forge/win-64 Cached urllib3 1.26.8 pyhd8ed1ab_1 conda-forge/noarch Cached vc 14.2 hb210afc_6 conda-forge/win-64 Cached vs2015_runtime 14.29.30037 h902a5da_6 conda-forge/win-64 Cached wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge/noarch Cached webencodings 0.5.1 py_1 conda-forge/noarch Cached werkzeug 2.0.3 pyhd8ed1ab_1 conda-forge/noarch Cached wheel 0.37.1 pyhd8ed1ab_0 conda-forge/noarch Cached widgetsnbextension 3.5.2 py38haa244fe_1 conda-forge/win-64 Cached win_inet_pton 1.1.0 py38haa244fe_3 conda-forge/win-64 Cached winpty 0.4.3 4 conda-forge/win-64 Cached wrapt 1.13.3 py38h294d835_1 conda-forge/win-64 Cached xorg-libxau 1.0.9 hcd874cb_0 conda-forge/win-64 Cached xorg-libxdmcp 1.1.3 hcd874cb_0 conda-forge/win-64 Cached xz 5.2.5 h62dcd97_1 conda-forge/win-64 Cached yaml 0.2.5 h8ffe710_2 conda-forge/win-64 Cached yarl 1.7.2 py38h294d835_1 conda-forge/win-64 Cached zeromq 4.3.4 h0e60522_1 conda-forge/win-64 Cached zfp 0.5.5 h0e60522_8 conda-forge/win-64 Cached zipp 3.7.0 pyhd8ed1ab_1 conda-forge/noarch Cached zlib 1.2.11 h8ffe710_1013 conda-forge/win-64 Cached zstd 1.5.2 h6255e5f_0 conda-forge/win-64 Cached
Summary:
Install: 266 packages
Total download: 0 B
Confirm changes: [Y/n] y
Downloading and Extracting Packages keras-applications-1 | 30 KB | ####################################################################################################################################################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: | Enabling notebook extension jupyter-js-widgets/extension...
done #
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(base) PS C:\Users\kates> conda activate caiman-test
(caiman-test) PS C:\Users\kates> python3 -c "import caiman; print(caiman.version)"
Python was not found; run without arguments to install from the Microsoft Store, or disable this shortcut from Settings > Manage App Execution Aliases.
(caiman-test) PS C:\Users\kates> python3 -c
Python was not found; run without arguments to install from the Microsoft Store, or disable this shortcut from Settings > Manage App Execution Aliases.
(caiman-test) PS C:\Users\kates> python -c "import caiman; print(caiman.version)"
Traceback (most recent call last):
File "
(caiman-test) PS C:\Users\kates> python -c "import caiman; print(version)"
Traceback (most recent call last):
File "
'mesmerize/plotting/widgets/colormaps/Spectral.png'
'mesmerize/plotting/widgets/colormaps/spectral.png'
Resolved https://github.com/kushalkolar/MESmerize.git to commit cf7594643bb32c4e64d7d80f84f4b195812349e5 Preparing metadata (setup.py) ... done Collecting cycler==0.10.0 Using cached cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) Requirement already satisfied: dask>=1.1.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2022.2.1) Requirement already satisfied: future>=0.18.2 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (0.18.2) Requirement already satisfied: h5py~=2.10.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2.10.0) Requirement already satisfied: ipykernel>=4.10 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (6.9.1) Requirement already satisfied: ipython>=7.15.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (8.0.1) Requirement already satisfied: ipyparallel>=6.3 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (8.2.0) Requirement already satisfied: MarkupSafe>=1.1.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2.1.0) Collecting matplotlib<=3.2.1 Downloading matplotlib-3.2.1-cp38-cp38-win_amd64.whl (9.2 MB) ---------------------------------------- 9.2/9.2 MB 17.4 MB/s eta 0:00:00 Collecting opencv-contrib-python>=4.2 Using cached opencv_contrib_python-4.5.5.62-cp36-abi3-win_amd64.whl (42.2 MB) Requirement already satisfied: opencv-python>=4.2 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (4.5.5) Requirement already satisfied: pandas in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (1.4.1) Requirement already satisfied: Pillow>=5.4.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (9.0.1) Requirement already satisfied: psutil in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (5.9.0) Collecting PyQt5<=5.12,>=5.9.2 Using cached PyQt5-5.12-5.12.1_a-cp35.cp36.cp37.cp38-none-win_amd64.whl (49.4 MB) Requirement already satisfied: python-dateutil>=2.8.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2.8.2) Requirement already satisfied: QtPy>=1.6.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2.0.1) Collecting qtap Using cached qtap-0.1.2-py3-none-any.whl (19 kB) Collecting scikit-image~=0.15.0 Downloading scikit-image-0.15.0.tar.gz (32.3 MB) ---------------------------------------- 32.3/32.3 MB 11.3 MB/s eta 0:00:00 Preparing metadata (setup.py) ... done Collecting scikit-learn~=0.23.1 Downloading scikit_learn-0.23.2-cp38-cp38-win_amd64.whl (6.8 MB) ---------------------------------------- 6.8/6.8 MB 19.8 MB/s eta 0:00:00 Requirement already satisfied: scipy>=1.2.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (1.8.0) Collecting seaborn==0.9.0 Using cached seaborn-0.9.0-py3-none-any.whl (208 kB) Collecting spyder==3.3.3 Using cached spyder-3.3.3-py3-none-any.whl (2.8 MB) Requirement already satisfied: tifffile in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2022.2.9) Requirement already satisfied: tqdm>=4.37.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (4.63.0) Requirement already satisfied: PeakUtils in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (1.3.3) Collecting tables>=3.6.1 Downloading tables-3.7.0-cp38-cp38-win_amd64.whl (6.9 MB) ---------------------------------------- 6.9/6.9 MB 19.1 MB/s eta 0:00:00 Requirement already satisfied: joblib>=0.15.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (1.1.0) Collecting graphviz>=0.13 Using cached graphviz-0.19.1-py3-none-any.whl (46 kB) Collecting numba>=0.50.0 Downloading numba-0.55.1-cp38-cp38-win_amd64.whl (2.4 MB) ---------------------------------------- 2.4/2.4 MB 25.0 MB/s eta 0:00:00 Requirement already satisfied: holoviews in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (1.14.8) Requirement already satisfied: jupyter in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (1.0.0) Requirement already satisfied: pynwb in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (1.4.0) Requirement already satisfied: pyqtgraph in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (0.12.3) Collecting tk Using cached tk-0.1.0-py3-none-any.whl (3.9 kB) Collecting tcl Using cached Tcl-0.2-py3-none-any.whl (2.4 kB) Requirement already satisfied: bokeh<2.5.0,>=2.4.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (2.4.2) Collecting nuset-lib Using cached nuset_lib-0.2.0-py3-none-any.whl (196 kB) Collecting sk-video Using cached sk_video-1.1.10-py2.py3-none-any.whl (2.3 MB) Requirement already satisfied: click in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from mesmerize==0.9.0) (8.0.4) Collecting xmltodict Using cached xmltodict-0.12.0-py2.py3-none-any.whl (9.2 kB) Requirement already satisfied: six in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from cycler==0.10.0->mesmerize==0.9.0) (1.16.0) Requirement already satisfied: numpy>=1.9.3 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from seaborn==0.9.0->mesmerize==0.9.0) (1.22.2) Requirement already satisfied: qtconsole>=4.2.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from spyder==3.3.3->mesmerize==0.9.0) (5.2.2) Collecting keyring Downloading keyring-23.5.0-py3-none-any.whl (33 kB) Requirement already satisfied: jedi>=0.9.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from spyder==3.3.3->mesmerize==0.9.0) (0.18.1) Requirement already satisfied: cloudpickle in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from spyder==3.3.3->mesmerize==0.9.0) (2.0.0) Collecting numpydoc Downloading numpydoc-1.2-py3-none-any.whl (51 kB) ---------------------------------------- 51.1/51.1 KB ? eta 0:00:00 Collecting pycodestyle Using cached pycodestyle-2.8.0-py2.py3-none-any.whl (42 kB) Requirement already satisfied: pyzmq in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from spyder==3.3.3->mesmerize==0.9.0) (22.3.0) Collecting chardet>=2.0.0 Using cached chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting pylint Using cached pylint-2.12.2-py3-none-any.whl (414 kB) Requirement already satisfied: pygments>=2.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from spyder==3.3.3->mesmerize==0.9.0) (2.11.2) Requirement already satisfied: nbconvert in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from spyder==3.3.3->mesmerize==0.9.0) (6.4.2) Collecting pyflakes Using cached pyflakes-2.4.0-py2.py3-none-any.whl (69 kB) Collecting rope>=0.10.5 Using cached rope-0.23.0-py3-none-any.whl (187 kB) Requirement already satisfied: pickleshare in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from spyder==3.3.3->mesmerize==0.9.0) (0.7.5) Collecting sphinx Using cached Sphinx-4.4.0-py3-none-any.whl (3.1 MB) Collecting qtawesome>=0.4.1 Using cached QtAwesome-1.1.1-py3-none-any.whl (2.3 MB) Collecting spyder-kernels<1.0,>=0.4.2 Using cached spyder_kernels-0.5.2-py2.py3-none-any.whl (42 kB) Requirement already satisfied: packaging>=16.8 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from bokeh<2.5.0,>=2.4.0->mesmerize==0.9.0) (21.3) Requirement already satisfied: tornado>=5.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from bokeh<2.5.0,>=2.4.0->mesmerize==0.9.0) (6.1) Requirement 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argon2-cffi->notebook->jupyter->mesmerize==0.9.0) (21.2.0) Requirement already satisfied: webencodings in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from bleach->panel>=0.8.0->holoviews->mesmerize==0.9.0) (0.5.1) Requirement already satisfied: cachetools<6.0,>=2.0.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from google-auth<3,>=1.6.3->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (5.0.0) Requirement already satisfied: pyasn1-modules>=0.2.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from google-auth<3,>=1.6.3->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (0.2.8) Requirement already satisfied: rsa<5,>=3.1.4 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from google-auth<3,>=1.6.3->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (4.8) Requirement already satisfied: requests-oauthlib>=0.7.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (1.3.1) Requirement already satisfied: cffi>=1.0.1 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from argon2-cffi-bindings->argon2-cffi->notebook->jupyter->mesmerize==0.9.0) (1.15.0) Requirement already satisfied: pycparser in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi->notebook->jupyter->mesmerize==0.9.0) (2.21) Requirement already satisfied: pyasn1<0.5.0,>=0.4.6 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (0.4.8) Requirement already satisfied: oauthlib>=3.0.0 in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard<3,>=2.3.0->tensorflow->nuset-lib->mesmerize==0.9.0) (3.2.0) Building wheels for collected packages: mesmerize, scikit-image Building wheel for mesmerize (setup.py) ... done Created wheel for mesmerize: filename=mesmerize-0.9.0-py3-none-any.whl size=1001227 sha256=35d85314899e08d719705ca14f118303f8898389bb3e7c6309602b897f9a228c Stored in directory: C:\Users\kates\AppData\Local\Temp\pip-ephem-wheel-cache-nrb9yxam\wheels\d1\30\5f\e4337c98aa54515d1527d7632c9c0db5921d7f8d0950043e80 Building wheel for scikit-image (setup.py) ... error error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [490 lines of output] Partial import of skimage during the build process. Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage_shared\geometry.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage_shared\transform.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage_shared\interpolation.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\draw_draw.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature\corner_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature\censure_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature\orb_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature\brief_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_texture.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_hessian_det_appx.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_hoghistogram.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_cascade.cpp C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\feature_haar.cpp Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_unwrap_1d.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_unwrap_2d.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_unwrap_3d.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_denoise_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\restoration_nl_means_denoising.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\filters\rank/core_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\filters\rank/generic_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\filters\rank/percentile_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\filters\rank/bilateral_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\future\graph_ncut_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\graph_spath.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\graph_mcp.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\graph\heap.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\io_plugins/_colormixer.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\io_plugins/_histograms.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_ccomp.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_find_contours_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_moments_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_marching_cubes_classic_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_marching_cubes_lewiner_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\measure_pnpoly.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_watershed.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_skeletonize_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_convex_hull.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_greyreconstruct.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_extrema_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_skeletonize_3d_cy.cpp Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_extrema_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_flood_fill_cy.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\morphology_max_tree.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\transform_hough_transform.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\transform_warps_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\transform_radon_transform.c Cython >= 0.23.4 not found; falling back to pre-built C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\segmentation_felzenszwalb_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\segmentation_quickshift_cy.c C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\skimage\segmentation_slic.c running bdist_wheel running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "skimage._shared.geometry" sources INFO: building extension "skimage._shared.transform" sources INFO: building extension "skimage._shared.interpolation" sources INFO: building extension "skimage.draw._draw" sources INFO: building extension "skimage.feature._cascade" sources INFO: building extension "skimage.feature.corner_cy" sources INFO: building extension "skimage.feature.censure_cy" sources INFO: building extension "skimage.feature.orb_cy" sources INFO: building extension "skimage.feature.brief_cy" sources INFO: building extension "skimage.feature._texture" sources INFO: building extension "skimage.feature._hessian_det_appx" sources INFO: building extension "skimage.feature._hoghistogram" sources INFO: building extension "skimage.feature._haar" sources INFO: building extension "skimage.restoration._unwrap_1d" sources INFO: building extension "skimage.restoration._unwrap_2d" sources INFO: building extension "skimage.restoration._unwrap_3d" sources INFO: building extension "skimage.restoration._denoise_cy" sources INFO: building extension "skimage.restoration._nl_means_denoising" sources INFO: building extension "skimage.filters.rank.core_cy" sources INFO: building extension "skimage.filters.rank.generic_cy" sources INFO: building extension "skimage.filters.rank.percentile_cy" sources INFO: building extension "skimage.filters.rank.bilateral_cy" sources INFO: building extension "skimage.future.graph._ncut_cy" sources INFO: building extension "skimage.graph._spath" sources INFO: building extension "skimage.graph._mcp" sources INFO: building extension "skimage.graph.heap" sources INFO: building extension "skimage.io._plugins._colormixer" sources INFO: building extension "skimage.io._plugins._histograms" sources INFO: building extension "skimage.measure._ccomp" sources INFO: building extension "skimage.measure._find_contours_cy" sources INFO: building extension "skimage.measure._moments_cy" sources INFO: building extension "skimage.measure._marching_cubes_classic_cy" sources INFO: building extension "skimage.measure._marching_cubes_lewiner_cy" sources INFO: building extension "skimage.measure._pnpoly" sources INFO: building extension "skimage.morphology._watershed" sources INFO: building extension "skimage.morphology._skeletonize_cy" sources INFO: building extension "skimage.morphology._convex_hull" sources INFO: building extension "skimage.morphology._greyreconstruct" sources INFO: building extension "skimage.morphology._max_tree" sources INFO: building extension "skimage.morphology._skeletonize_3d_cy" sources INFO: building extension "skimage.morphology._extrema_cy" sources INFO: building extension "skimage.morphology._flood_fill_cy" sources INFO: building extension "skimage.transform._hough_transform" sources INFO: building extension "skimage.transform._warps_cy" sources INFO: building extension "skimage.transform._radon_transform" sources INFO: building extension "skimage.segmentation._felzenszwalb_cy" sources INFO: building extension "skimage.segmentation._quickshift_cy" sources INFO: building extension "skimage.segmentation._slic" sources INFO: building extension "skimage.external.tifffile._tifffile" sources INFO: building data_files sources INFO: build_src: building npy-pkg config files C:\Users\kates\anaconda3\envs\caiman-test\lib\site-packages\setuptools\command\install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_py creating build creating build\lib.win-amd64-3.8 creating build\lib.win-amd64-3.8\skimage copying skimage\conftest.py -> build\lib.win-amd64-3.8\skimage copying skimage\setup.py -> build\lib.win-amd64-3.8\skimage copying skimage_build.py -> build\lib.win-amd64-3.8\skimage copying skimage__init__.py -> build\lib.win-amd64-3.8\skimage creating build\lib.win-amd64-3.8\skimage\color copying skimage\color\adapt_rgb.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color\colorconv.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color\colorlabel.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color\delta_e.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color\rgb_colors.py -> build\lib.win-amd64-3.8\skimage\color copying skimage\color__init__.py -> build\lib.win-amd64-3.8\skimage\color creating build\lib.win-amd64-3.8\skimage\data copying skimage\data_binary_blobs.py -> build\lib.win-amd64-3.8\skimage\data copying skimage\data_detect.py -> build\lib.win-amd64-3.8\skimage\data copying skimage\data__init__.py -> build\lib.win-amd64-3.8\skimage\data creating build\lib.win-amd64-3.8\skimage\draw copying skimage\draw\draw.py -> build\lib.win-amd64-3.8\skimage\draw copying skimage\draw\draw3d.py -> build\lib.win-amd64-3.8\skimage\draw copying skimage\draw\setup.py -> build\lib.win-amd64-3.8\skimage\draw copying skimage\draw_random_shapes.py -> build\lib.win-amd64-3.8\skimage\draw copying skimage\draw__init__.py -> build\lib.win-amd64-3.8\skimage\draw creating build\lib.win-amd64-3.8\skimage\exposure copying skimage\exposure\exposure.py -> build\lib.win-amd64-3.8\skimage\exposure copying skimage\exposure\setup.py -> build\lib.win-amd64-3.8\skimage\exposure copying skimage\exposure_adapthist.py -> build\lib.win-amd64-3.8\skimage\exposure copying skimage\exposure__init__.py -> build\lib.win-amd64-3.8\skimage\exposure creating build\lib.win-amd64-3.8\skimage\external copying skimage\external\setup.py -> build\lib.win-amd64-3.8\skimage\external copying skimage\external\test_tifffile.py -> build\lib.win-amd64-3.8\skimage\external copying skimage\external__init__.py -> build\lib.win-amd64-3.8\skimage\external creating build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\blob.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\brief.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\censure.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\corner.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\haar.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\masked_register_translation.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\match.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\orb.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\peak.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\register_translation.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\setup.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\template.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\texture.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature\util.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature_canny.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature_daisy.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature_hog.py -> build\lib.win-amd64-3.8\skimage\feature copying skimage\feature__init__.py -> build\lib.win-amd64-3.8\skimage\feature creating build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\edges.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\lpi_filter.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\ridges.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\setup.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters\thresholding.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_gabor.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_gaussian.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_median.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_rank_order.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters_unsharp_mask.py -> build\lib.win-amd64-3.8\skimage\filters copying skimage\filters__init__.py -> build\lib.win-amd64-3.8\skimage\filters creating build\lib.win-amd64-3.8\skimage\future copying skimage\future\manual_segmentation.py -> build\lib.win-amd64-3.8\skimage\future copying skimage\future\setup.py -> build\lib.win-amd64-3.8\skimage\future copying skimage\future__init__.py -> build\lib.win-amd64-3.8\skimage\future creating build\lib.win-amd64-3.8\skimage\graph copying skimage\graph\mcp.py -> build\lib.win-amd64-3.8\skimage\graph copying skimage\graph\setup.py -> build\lib.win-amd64-3.8\skimage\graph copying skimage\graph\spath.py -> build\lib.win-amd64-3.8\skimage\graph copying skimage\graph__init__.py -> build\lib.win-amd64-3.8\skimage\graph creating build\lib.win-amd64-3.8\skimage\io copying skimage\io\collection.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io\manage_plugins.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io\setup.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io\sift.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io\util.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io_image_stack.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io_io.py -> build\lib.win-amd64-3.8\skimage\io copying skimage\io__init__.py -> build\lib.win-amd64-3.8\skimage\io creating build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\block.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\entropy.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\fit.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\pnpoly.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\profile.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\setup.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure\simple_metrics.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_find_contours.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_label.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_marching_cubes_classic.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_marching_cubes_lewiner.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_marching_cubes_lewiner_luts.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_moments.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_polygon.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_regionprops.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure_structural_similarity.py -> build\lib.win-amd64-3.8\skimage\measure copying skimage\measure__init__.py -> build\lib.win-amd64-3.8\skimage\measure creating build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\binary.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\convex_hull.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\extrema.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\grey.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\greyreconstruct.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\max_tree.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\misc.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\selem.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\setup.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology\watershed.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology_flood_fill.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology_skeletonize.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology_skeletonize_3d.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology_util.py -> build\lib.win-amd64-3.8\skimage\morphology copying skimage\morphology__init__.py -> build\lib.win-amd64-3.8\skimage\morphology creating build\lib.win-amd64-3.8\skimage\novice copying skimage\novice_novice.py -> build\lib.win-amd64-3.8\skimage\novice copying skimage\novice__init__.py -> build\lib.win-amd64-3.8\skimage\novice creating build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\deconvolution.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\inpaint.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\non_local_means.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\setup.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\uft.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration\unwrap.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration_cycle_spin.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration_denoise.py -> build\lib.win-amd64-3.8\skimage\restoration copying skimage\restoration__init__.py -> build\lib.win-amd64-3.8\skimage\restoration creating build\lib.win-amd64-3.8\skimage\scripts copying skimage\scripts\skivi.py -> build\lib.win-amd64-3.8\skimage\scripts copying skimage\scripts__init__.py -> build\lib.win-amd64-3.8\skimage\scripts creating build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\active_contour_model.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\boundaries.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\morphsnakes.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\random_walker_segmentation.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\setup.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation\slic_superpixels.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_chan_vese.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_clear_border.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_felzenszwalb.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_join.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation_quickshift.py -> build\lib.win-amd64-3.8\skimage\segmentation copying skimage\segmentation__init__.py -> build\lib.win-amd64-3.8\skimage\segmentation creating build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\finite_radon_transform.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\histogram_matching.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\hough_transform.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\integral.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\pyramids.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\radon_transform.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\seam_carving.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform\setup.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform_geometric.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform_warps.py -> build\lib.win-amd64-3.8\skimage\transform copying skimage\transform__init__.py -> build\lib.win-amd64-3.8\skimage\transform creating build\lib.win-amd64-3.8\skimage\util copying skimage\util\apply_parallel.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\arraycrop.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\dtype.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\lookfor.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\noise.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\shape.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util\unique.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util_invert.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util_montage.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util_regular_grid.py -> build\lib.win-amd64-3.8\skimage\util copying skimage\util__init__.py -> build\lib.win-amd64-3.8\skimage\util creating build\lib.win-amd64-3.8\skimage\viewer copying skimage\viewer\qt.py -> build\lib.win-amd64-3.8\skimage\viewer copying skimage\viewer__init__.py -> build\lib.win-amd64-3.8\skimage\viewer creating build\lib.win-amd64-3.8\skimage_shared copying skimage_shared\setup.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared\testing.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared\utils.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared\version_requirements.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared_geometry.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared_tempfile.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared_warnings.py -> build\lib.win-amd64-3.8\skimage_shared copying skimage_shared__init__.py -> build\lib.win-amd64-3.8\skimage_shared creating build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests\test_adapt_rgb.py -> build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests\test_colorconv.py -> build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests\test_colorlabel.py -> build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests\test_delta_e.py -> build\lib.win-amd64-3.8\skimage\color\tests copying skimage\color\tests__init__.py -> build\lib.win-amd64-3.8\skimage\color\tests creating build\lib.win-amd64-3.8\skimage\data\tests copying skimage\data\tests\test_data.py -> build\lib.win-amd64-3.8\skimage\data\tests copying skimage\data\tests__init__.py -> build\lib.win-amd64-3.8\skimage\data\tests creating build\lib.win-amd64-3.8\skimage\draw\tests copying skimage\draw\tests\test_draw.py -> build\lib.win-amd64-3.8\skimage\draw\tests copying skimage\draw\tests\test_draw3d.py -> build\lib.win-amd64-3.8\skimage\draw\tests copying skimage\draw\tests\test_random_shapes.py -> build\lib.win-amd64-3.8\skimage\draw\tests copying skimage\draw\tests__init__.py -> build\lib.win-amd64-3.8\skimage\draw\tests creating build\lib.win-amd64-3.8\skimage\exposure\tests copying skimage\exposure\tests\test_exposure.py -> build\lib.win-amd64-3.8\skimage\exposure\tests copying skimage\exposure\tests__init__.py -> build\lib.win-amd64-3.8\skimage\exposure\tests creating build\lib.win-amd64-3.8\skimage\external\tifffile copying skimage\external\tifffile\tifffile.py -> build\lib.win-amd64-3.8\skimage\external\tifffile copying skimage\external\tifffile__init.py -> build\lib.win-amd64-3.8\skimage\external\tifffile creating build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_blob.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_brief.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_canny.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_cascade.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_censure.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_corner.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_daisy.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_haar.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_hog.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_masked_register_translation.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_match.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_orb.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_peak.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_register_translation.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_template.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_texture.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests\test_util.py -> build\lib.win-amd64-3.8\skimage\feature\tests copying skimage\feature\tests__init.py -> build\lib.win-amd64-3.8\skimage\feature\tests creating build\lib.win-amd64-3.8\skimage\filters\rank copying skimage\filters\rank\bilateral.py -> build\lib.win-amd64-3.8\skimage\filters\rank copying skimage\filters\rank\generic.py -> build\lib.win-amd64-3.8\skimage\filters\rank copying skimage\filters\rank_percentile.py -> build\lib.win-amd64-3.8\skimage\filters\rank copying skimage\filters\rank__init.py -> build\lib.win-amd64-3.8\skimage\filters\rank creating build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_edges.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_gabor.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_gaussian.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_lpi_filter.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_median.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_ridges.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_thresholding.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests\test_unsharp_mask.py -> build\lib.win-amd64-3.8\skimage\filters\tests copying skimage\filters\tests__init.py -> build\lib.win-amd64-3.8\skimage\filters\tests creating build\lib.win-amd64-3.8\skimage\filters\rank\tests copying skimage\filters\rank\tests\test_rank.py -> build\lib.win-amd64-3.8\skimage\filters\rank\tests copying skimage\filters\rank\tests__init.py -> build\lib.win-amd64-3.8\skimage\filters\rank\tests creating build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph\graph_cut.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph\graph_merge.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph\rag.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph\setup.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph_ncut.py -> build\lib.win-amd64-3.8\skimage\future\graph copying skimage\future\graph__init.py -> build\lib.win-amd64-3.8\skimage\future\graph creating build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_anisotropy.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_connect.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_flexible.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_heap.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_mcp.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests\test_spath.py -> build\lib.win-amd64-3.8\skimage\graph\tests copying skimage\graph\tests__init.py -> build\lib.win-amd64-3.8\skimage\graph\tests creating build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_collection.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_colormixer.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_fits.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_histograms.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_imageio.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_imread.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_io.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_mpl_imshow.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_multi_image.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_pil.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_plugin.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_plugin_util.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_sift.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_simpleitk.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests\test_tifffile.py -> build\lib.win-amd64-3.8\skimage\io\tests copying skimage\io\tests__init.py -> build\lib.win-amd64-3.8\skimage\io\tests creating build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\fits_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\gdal_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\gtk_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\imageio_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\imread_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\matplotlib_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\pil_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\qt_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\q_color_mixer.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\q_histogram.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\simpleitk_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\skivi.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\tifffile_plugin.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins\util.py -> build\lib.win-amd64-3.8\skimage\io_plugins copying skimage\io_plugins__init__.py -> build\lib.win-amd64-3.8\skimage\io_plugins creating build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_block.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_entropy.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_find_contours.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_fit.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_marching_cubes.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_moments.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_pnpoly.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_polygon.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_profile.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_regionprops.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_simple_metrics.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\test_structural_similarity.py -> build\lib.win-amd64-3.8\skimage\measure\tests copying skimage\measure\tests\init__.py -> build\lib.win-amd64-3.8\skimage\measure\tests creating build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_binary.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_ccomp.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_convex_hull.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_extrema.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_flood_fill.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_grey.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_max_tree.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_misc.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_reconstruction.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_selem.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_skeletonize.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_skeletonize_3d.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\test_watershed.py -> build\lib.win-amd64-3.8\skimage\morphology\tests copying skimage\morphology\tests\init__.py -> build\lib.win-amd64-3.8\skimage\morphology\tests creating build\lib.win-amd64-3.8\skimage\novice\tests copying skimage\novice\tests\test_novice.py -> build\lib.win-amd64-3.8\skimage\novice\tests copying skimage\novice\tests\init.py -> build\lib.win-amd64-3.8\skimage\novice\tests creating build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\test_denoise.py -> build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\test_inpaint.py -> build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\test_restoration.py -> build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\test_unwrap.py -> build\lib.win-amd64-3.8\skimage\restoration\tests copying skimage\restoration\tests\init__.py -> build\lib.win-amd64-3.8\skimage\restoration\tests creating build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_active_contour_model.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_boundaries.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_chan_vese.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_clear_border.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_felzenszwalb.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_join.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_morphsnakes.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_quickshift.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_random_walker.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\test_slic.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests copying skimage\segmentation\tests\init__.py -> build\lib.win-amd64-3.8\skimage\segmentation\tests creating build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_finite_radon_transform.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_geometric.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_histogram_matching.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_hough_transform.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_integral.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_pyramids.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_radon_transform.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_seam_carving.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\test_warps.py -> build\lib.win-amd64-3.8\skimage\transform\tests copying skimage\transform\tests\init.py -> build\lib.win-amd64-3.8\skimage\transform\tests creating build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_apply_parallel.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_arraycrop.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_arraypad.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_dtype.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_invert.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_montage.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_random_noise.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_regular_grid.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_shape.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\test_unique_rows.py -> build\lib.win-amd64-3.8\skimage\util\tests copying skimage\util\tests\init.py -> build\lib.win-amd64-3.8\skimage\util\tests creating build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\base.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\linetool.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\painttool.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\recttool.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools copying skimage\viewer\canvastools\init__.py -> build\lib.win-amd64-3.8\skimage\viewer\canvastools creating build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\base.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\canny.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\color_histogram.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\crop.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\labelplugin.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\lineprofile.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\measure.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\overlayplugin.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\plotplugin.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins copying skimage\viewer\plugins\init__.py -> build\lib.win-amd64-3.8\skimage\viewer\plugins creating build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_plugins.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_tools.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_utils.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_viewer.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\test_widgets.py -> build\lib.win-amd64-3.8\skimage\viewer\tests copying skimage\viewer\tests\init.py -> build\lib.win-amd64-3.8\skimage\viewer\tests creating build\lib.win-amd64-3.8\skimage\viewer\utils copying skimage\viewer\utils\canvas.py -> build\lib.win-amd64-3.8\skimage\viewer\utils copying skimage\viewer\utils\core.py -> build\lib.win-amd64-3.8\skimage\viewer\utils copying skimage\viewer\utils\dialogs.py -> build\lib.win-amd64-3.8\skimage\viewer\utils copying skimage\viewer\utils\init.py -> build\lib.win-amd64-3.8\skimage\viewer\utils creating build\lib.win-amd64-3.8\skimage\viewer\viewers copying skimage\viewer\viewers\core.py -> build\lib.win-amd64-3.8\skimage\viewer\viewers copying skimage\viewer\viewers\init.py -> build\lib.win-amd64-3.8\skimage\viewer\viewers creating build\lib.win-amd64-3.8\skimage\viewer\widgets copying skimage\viewer\widgets\core.py -> build\lib.win-amd64-3.8\skimage\viewer\widgets copying skimage\viewer\widgets\history.py -> build\lib.win-amd64-3.8\skimage\viewer\widgets copying skimage\viewer\widgets\init__.py -> build\lib.win-amd64-3.8\skimage\viewer\widgets creating build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_geometry.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_interpolation.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_safe_as_int.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_testing.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_utils.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\test_version_requirements.py -> build\lib.win-amd64-3.8\skimage_shared\tests copying skimage_shared\tests\init__.py -> build\lib.win-amd64-3.8\skimage_shared\tests running build_ext INFO: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils INFO: customize MSVCCompiler INFO: customize MSVCCompiler using ConditionalOpenMP INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (/O2) error: Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/ INFO: CCompilerOpt.cache_flush[817] : write cache to path -> C:\Users\kates\AppData\Local\Temp\pip-install-oucefv9m\scikit-image_54b971ffd7a24654bc838485d416791a\build\temp.win-amd64-3.8\Release\ccompiler_opt_cache_ext.py [end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for scikit-image Running setup.py clean for scikit-image Successfully built mesmerize Failed to build scikit-image Installing collected packages: tk, tf-estimator-nightly, tcl, snowballstemmer, rope, pywin32-ctypes, mccabe, libclang, keras, flatbuffers, alabaster, xmltodict, toml, tensorflow-io-gcs-filesystem, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, qtap, PyQt5, pyflakes, pycodestyle, numpy, llvmlite, lazy-object-proxy, isort, imagesize, graphviz, docutils, cycler, chardet, babel, sphinx, opencv-contrib-python, numexpr, numba, matplotlib, keyring, astroid, tables, sk-video, seaborn, scikit-learn, scikit-image, qtawesome, pylint, numpydoc, tensorflow, spyder-kernels, spyder, nuset-lib, mesmerize Attempting uninstall: PyQt5 Found existing installation: PyQt5 5.12.3 Uninstalling PyQt5-5.12.3: Successfully uninstalled PyQt5-5.12.3 Attempting uninstall: numpy Found existing installation: numpy 1.22.2 Uninstalling numpy-1.22.2: Successfully uninstalled numpy-1.22.2 Attempting uninstall: cycler Found existing installation: cycler 0.11.0 Uninstalling cycler-0.11.0: Successfully uninstalled cycler-0.11.0 Attempting uninstall: matplotlib Found existing installation: matplotlib 3.5.1 Uninstalling matplotlib-3.5.1: Successfully uninstalled matplotlib-3.5.1 Attempting uninstall: scikit-learn Found existing installation: scikit-learn 1.0.2 Uninstalling scikit-learn-1.0.2: Successfully uninstalled scikit-learn-1.0.2 Attempting uninstall: scikit-image Found existing installation: scikit-image 0.19.2 Uninstalling scikit-image-0.19.2: Successfully uninstalled scikit-image-0.19.2 Running setup.py install for scikit-image ... error error: subprocess-exited-with-error
× Running setup.py install for scikit-image did not run successfully.
│ exit code: 1
╰─> [12 lines of output]
Traceback (most recent call last):
File "
note: This error originates from a subprocess, and is likely not a problem with pip. WARNING: No metadata found in c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages Rolling back uninstall of scikit-image Moving to c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages\doc\ext\ from C:\Users\kates\anaconda3\envs\caiman-test\Lib\site-packages\doc\~xt Moving to c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages\scikit_image-0.19.2.dist-info\ from C:\Users\kates\anaconda3\envs\caiman-test\Lib\site-packages\~cikit_image-0.19.2.dist-info Moving to c:\users\kates\anaconda3\envs\caiman-test\lib\site-packages\skimage\ from C:\Users\kates\anaconda3\envs\caiman-test\Lib\site-packages\~kimage Moving to c:\users\kates\anaconda3\envs\caiman-test\scripts\skivi-script.py from C:\Users\kates\AppData\Local\Temp\pip-uninstall-rdwqu2h9\skivi-script.py Moving to c:\users\kates\anaconda3\envs\caiman-test\scripts\skivi.exe from C:\Users\kates\AppData\Local\Temp\pip-uninstall-rdwqu2h9\skivi.exe error: legacy-install-failure
× Encountered error while trying to install package. ╰─> scikit-image
note: This is an issue with the package mentioned above, not pip. hint: See above for output from the failure. (caiman-test) PS C:\Users\kates>
Can you try:
mamba install scikit-image
and then again:
pip install git+https://github.com/kushalkolar/MESmerize.git
It might be easier for you to use the Mesmerize VM on Windows if that's a viable option for you.
installed successfully...now what should I do?
launch mesmerize
and see if you don't get the issue with importing caiman
(caiman-test) PS C:\Users\kates> mesmerize
Traceback (most recent call last):
File "C:\Users\kates\anaconda3\envs\caiman-test\lib\runpy.py", line 194, in _run_module_as_main
return _run_code(code, main_globals, None,
File "C:\Users\kates\anaconda3\envs\caiman-test\lib\runpy.py", line 87, in _run_code
exec(code, run_globals)
File "C:\Users\kates\anaconda3\envs\caiman-test\Scripts\mesmerize.exe__main.py", line 4, in
didn't work from caiman-test environment
Seems like the pip install removed some pre-compiled objects for some dependencies, reinstalling caiman in that env should get them back:
mamba install caiman -c conda-forge
yeah not sure i keep getting new errors everytime...
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mamba (0.7.6) supported by @QuantStack
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█████████████████████████████████████████████████████████████
Looking for: ['caiman']
pkgs/r/win-64 [====================] (00m:00s) No change pkgs/main/win-64 [====================] (00m:00s) No change pkgs/main/noarch [====================] (00m:00s) No change pkgs/msys2/noarch [====================] (00m:00s) No change pkgs/r/noarch [====================] (00m:00s) No change conda-forge/win-64 [====================] (00m:00s) No change pkgs/msys2/win-64 [====================] (00m:00s) No change conda-forge/noarch [====================] (00m:00s) No change Encountered problems while solving. Problem: package caiman-1.9.7-py38h5d928e2_0 requires python >=3.8,<3.9.0a0, but none of the providers can be installed
(base) PS C:\Users\kates> pip install git+https://github.com/kushalkolar/MESmerize.git Collecting git+https://github.com/kushalkolar/MESmerize.git Cloning https://github.com/kushalkolar/MESmerize.git to c:\users\kates\appdata\local\temp\pip-req-build-6ewdb8ml Running command git clone -q https://github.com/kushalkolar/MESmerize.git 'C:\Users\kates\AppData\Local\Temp\pip-req-build-6ewdb8ml' warning: the following paths have collided (e.g. case-sensitive paths on a case-insensitive filesystem) and only one from the same colliding group is in the working tree:
'mesmerize/plotting/widgets/colormaps/Spectral.png'
'mesmerize/plotting/widgets/colormaps/spectral.png'
Resolved https://github.com/kushalkolar/MESmerize.git to commit 6f4d0d5750b49856adc1dbe58c82be11a4399d8f Requirement already satisfied: cycler==0.10.0 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (0.10.0) Requirement already satisfied: dask>=1.1.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (2021.10.0) Requirement already satisfied: future>=0.18.2 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (0.18.2) Collecting h5py~=2.10.0 Using cached h5py-2.10.0.tar.gz (301 kB) Requirement already satisfied: ipykernel>=4.10 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (6.4.1) Requirement already satisfied: ipython>=7.15.0 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (7.29.0) Collecting ipyparallel>=6.3 Using cached ipyparallel-8.2.0-py3-none-any.whl (297 kB) Requirement already satisfied: MarkupSafe>=1.1.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (1.1.1) Collecting matplotlib<=3.2.1 Using cached matplotlib-3.2.1.tar.gz (40.3 MB) Collecting opencv-contrib-python>=4.2 Using cached opencv_contrib_python-4.5.5.62-cp36-abi3-win_amd64.whl (42.2 MB) Collecting opencv-python>=4.2 Using cached opencv_python-4.5.5.62-cp36-abi3-win_amd64.whl (35.4 MB) Requirement already satisfied: pandas in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (1.3.4) Requirement already satisfied: Pillow>=5.4.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (8.4.0) Requirement already satisfied: psutil in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (5.8.0) ERROR: Could not find a version that satisfies the requirement PyQt5<=5.12,>=5.9.2 (from mesmerize) (from versions: 5.12.3, 5.14.0, 5.14.1, 5.14.2, 5.15.0, 5.15.1, 5.15.2, 5.15.3, 5.15.4, 5.15.5, 5.15.6) ERROR: No matching distribution found for PyQt5<=5.12,>=5.9.2 (base) PS C:\Users\kates> conda install PyQt5 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
Current channels:
To search for alternate channels that may provide the conda package you're looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
(base) PS C:\Users\kates> pip install pyqt5 Collecting pyqt5 Downloading PyQt5-5.15.6-cp36-abi3-win_amd64.whl (6.7 MB) |████████████████████████████████| 6.7 MB 6.8 MB/s Collecting PyQt5-sip<13,>=12.8 Downloading PyQt5_sip-12.9.1-cp39-cp39-win_amd64.whl (77 kB) |████████████████████████████████| 77 kB 5.5 MB/s Collecting PyQt5-Qt5>=5.15.2 Downloading PyQt5_Qt5-5.15.2-py3-none-win_amd64.whl (50.1 MB) |████████████████████████████████| 50.1 MB 6.4 MB/s Installing collected packages: PyQt5-sip, PyQt5-Qt5, pyqt5 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. spyder 5.1.5 requires pyqtwebengine<5.13, which is not installed. spyder 5.1.5 requires pyqt5<5.13, but you have pyqt5 5.15.6 which is incompatible. Successfully installed PyQt5-Qt5-5.15.2 PyQt5-sip-12.9.1 pyqt5-5.15.6 (base) PS C:\Users\kates> pip install git+https://github.com/kushalkolar/MESmerize.git Collecting git+https://github.com/kushalkolar/MESmerize.git Cloning https://github.com/kushalkolar/MESmerize.git to c:\users\kates\appdata\local\temp\pip-req-build-gpyvasrm Running command git clone -q https://github.com/kushalkolar/MESmerize.git 'C:\Users\kates\AppData\Local\Temp\pip-req-build-gpyvasrm' warning: the following paths have collided (e.g. case-sensitive paths on a case-insensitive filesystem) and only one from the same colliding group is in the working tree:
'mesmerize/plotting/widgets/colormaps/Spectral.png'
'mesmerize/plotting/widgets/colormaps/spectral.png'
Resolved https://github.com/kushalkolar/MESmerize.git to commit 6f4d0d5750b49856adc1dbe58c82be11a4399d8f Requirement already satisfied: cycler==0.10.0 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (0.10.0) Requirement already satisfied: dask>=1.1.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (2021.10.0) Requirement already satisfied: future>=0.18.2 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (0.18.2) Collecting h5py~=2.10.0 Using cached h5py-2.10.0.tar.gz (301 kB) Requirement already satisfied: ipykernel>=4.10 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (6.4.1) Requirement already satisfied: ipython>=7.15.0 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (7.29.0) Collecting ipyparallel>=6.3 Using cached ipyparallel-8.2.0-py3-none-any.whl (297 kB) Requirement already satisfied: MarkupSafe>=1.1.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (1.1.1) Collecting matplotlib<=3.2.1 Using cached matplotlib-3.2.1.tar.gz (40.3 MB) Collecting opencv-contrib-python>=4.2 Using cached opencv_contrib_python-4.5.5.62-cp36-abi3-win_amd64.whl (42.2 MB) Collecting opencv-python>=4.2 Using cached opencv_python-4.5.5.62-cp36-abi3-win_amd64.whl (35.4 MB) Requirement already satisfied: pandas in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (1.3.4) Requirement already satisfied: Pillow>=5.4.1 in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (8.4.0) Requirement already satisfied: psutil in c:\users\kates\anaconda3\lib\site-packages (from mesmerize==0.9.0) (5.8.0) ERROR: Could not find a version that satisfies the requirement PyQt5<=5.12,>=5.9.2 (from mesmerize) (from versions: 5.12.3, 5.14.0, 5.14.1, 5.14.2, 5.15.0, 5.15.1, 5.15.2, 5.15.3, 5.15.4, 5.15.5, 5.15.6) ERROR: No matching distribution found for PyQt5<=5.12,>=5.9.2 (base) PS C:\Users\kates>
You are not the right environment, you're in the base
environment.
# activate the caiman-test environment which you were using
conda activate caiman-test
# reinstall caiman to get the compiled dependencies
mamba install caiman -c conda-forge
yeah, I tried that too...didn't work. not sure why the normal instructions aren't working for me.
@EricThomson has written a detailed guide on installing mesmerize & caiman on windows, I'd try this: https://github.com/EricThomson/mesmerize_setup
If you're new to python and virtual envs I would first try out Mesmerize with the VM.
thanks, I am downloading the VM to try it...will likely be switching to/using a linux machine so I won't be able to use the VM forever.
Python environments are much easier to manage in Linux! Feel free to post an issue if you have problems there as well.
yes, indeed. hope to move there
I suggest you add @EricThomson instructions to the docs for CaImAn installation. It worked!
Glad to hear that it worked! Yea we've been working on updating the installation instructions for py3.8, the installation is always the hardest part when working with Python applications.
Glad it worked! It should be much simpler soon. I plan to re-write that guide in the next couple of weeks.
@kas5dv closing this, feel free to open another issue if you encounter other problems.
Please try these things before posting an installation issue:
Create a fresh new anaconda or virtual environment.
If you're having difficulties with
caiman
installation try installing a specific version, for example:conda install -c conda-forge caiman==1.8.5
If you want to use caiman features,
caiman
must but installed in the same environment asmesmerize
.If you want to use certain features like kshape clustering or cross-correlation,
tslearn
must be installed in the same environment asmesmerize
.Otherwise use this template:
System information