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kushalkolar / MESmerize

Platform for Calcium Imaging analysis. DEPRECATED.
GNU General Public License v3.0
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[BUG] <CNMF> #94

Closed daiyh98 closed 2 years ago

daiyh98 commented 2 years ago

status: 0 output_info: Traceback (most recent call last): File "/home/donglab/mesmerize/lib/python3.6/site-packages/mesmerize/viewer/modules/batch_run_modules/CNMF.py", line 60, in run run_single(batch_dir, UUID, output) File "/home/donglab/mesmerize/lib/python3.6/site-packages/mesmerize/viewer/modules/batch_run_modules/CNMF.py", line 158, in run_single cnm.save(out_filename) File "/home/donglab/mesmerize/CaImAn/caiman/source_extraction/cnmf/cnmf.py", line 667, in save save_dict_to_hdf5(self.dict, filename) File "/home/donglab/mesmerize/CaImAn/caiman/utils/utils.py", line 429, in save_dict_to_hdf5 recursively_save_dict_contents_to_group(h5file, subdir, dic) File "/home/donglab/mesmerize/CaImAn/caiman/utils/utils.py", line 524, in recursively_save_dict_contents_to_group recursively_save_dict_contents_to_group(h5file, path + key + '/', item.dict) File "/home/donglab/mesmerize/CaImAn/caiman/utils/utils.py", line 509, in recursively_save_dict_contents_to_group recursively_save_dict_contents_to_group(h5file, path + key + '/', item) File "/home/donglab/mesmerize/CaImAn/caiman/utils/utils.py", line 496, in recursively_save_dict_contents_to_group raise ValueError('Error while saving {}.'.format(key)) ValueError: Error while saving var_name_hdf5.

daiyh98 commented 2 years ago

this error happens when everything seems to be done in a CNMF processing,

kushalkolar commented 2 years ago

Please follow the issue template and provide all details.

On Mon, Mar 21, 2022, 08:22 daiyh98 @.***> wrote:

this error happens when everything seems to be done in a CNMF processing,

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