metabox

a toolbox for metabolomic data analysis, interpretation and integrative exploration

Version: 1.2 (01 December 2016)

Description

An R-based web applications for data processing, statistical analysis, integrative visual exploration and functional analysis with several approaches (such as functional class scoring, overrepresentation analysis and WordCloud generation).

Installation and Running metabox

1. Require R software
2. Require opencpu
3. Install metabox using the following commands

   
   #Install devtools R package, if not exist
   install.packages('devtools', repos="http://cran.rstudio.com/")
   library(devtools)

Install dependent packages

source('https://bioconductor.org/biocLite.R') biocLite(c('impute','preprocessCore','GO.db','AnnotationDbi','WGCNA','piano','qpgraph','BioNet','ChemmineR'))

Install metabox

install_github('kwanjeeraw/metabox') install.packages("openssl")

Install OpenCPU single-user server

install.packages("opencpu") library(opencpu)

Run metabox on a web browser

opencpu$browse("library/metabox/www") ocpu_start_app("metabox")

Documentation
=========
see [homepage](http://kwanjeeraw.github.io/metabox/)

License
=========
[GNU General Public License (v3)](https://github.com/kwanjeeraw/metabox/blob/master/LICENSE)