Reproducible Workflows with Snakemake and R
An Extended Tutorial
- Contact: @bergmul, @lachlandeer & @julianlanger
What this Repo does
Source files for an extended tutorial on using Snakemake, R and packrat to execute a reproducible project
Installing relevant packages:
- From CRAN, install and
bookdown
- Install
Snakemake
from Python 3 to build workflow
- You need a
TeX
Installation for your OS
Building the repository:
- Change into this directory in a terminal
- In the terminal enter
snakemake all
and press RETURN