lamho86 phylolm issues - Githubissues

lamho86 / phylolm

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phylolm() obscure errors when a predictor has unused levels

#72 AMBarbosa opened 1 week ago
0
phyloglm coefficient=0 P value=1

#71 lfdelzam opened 1 month ago
2
Prediction accounting for phylogenetic

#70 MorceletL opened 2 months ago
1
trouble interpreting alpha

#69 reillybren closed 2 months ago
1
Phyloglm produces different results with normalized and raw predictor variables

#68 NB-Bio opened 5 months ago
0
Guidance on the visualization of phylolm models

#67 MarcRieraDominguez closed 7 months ago
0
Make logLik functions more compatible.

#66 Ax3man closed 9 months ago
1
logLik method and compatibility with MuMIn functions

#65 MarcRieraDominguez closed 8 months ago
2
Compatibility between phylolm and visreg

#64 MarcRieraDominguez closed 7 months ago
2
Error in optim(par = c(startB, startlL), fn = npllh, method = "L-BFGS-B", : L-BFGS-B needs finite values of 'fn'

#63 NB-Bio closed 6 months ago
1
null p-values for logistic phyloglm seem biased?

#62 pbradz opened 11 months ago
1
Fitting models with REML.

#61 pbastide closed 1 year ago
2
One-way ANOVA with phylolm

#60 matthieu-haudiquet opened 1 year ago
3
Interpret scale parameter when estimating dispersion in Poisson model

#59 ashdederich closed 6 months ago
1
Interpreting alpha in phyloglm

#58 Madeleinecg closed 6 months ago
1
Different p-value for same tree with different species sort

#57 GrRomas closed 9 months ago
3
nobs and logLik for phyloglm

#56 dramanica closed 1 year ago
0
nobs and loglik fixes

#55 dramanica closed 1 year ago
1
Error running phyloglm: only 0 or 1 leaf with data on all variables: not enough

#54 SidneyGouveia closed 2 years ago
0
Best practices for phyloglm input phylogeny - ultrametric or not?

#53 marybelsoto opened 2 years ago
2
'Both' model selection gives worse results than 'forward'?

#52 rvosa closed 1 year ago
2
How many parameters does phylolm estimate? A comparison with caper::pgls()

#51 MarcRieraDominguez closed 8 months ago
4
Phyloglm univariate case: testing for phylogenetic signal

#50 gcjarvis closed 2 years ago
4
R-squared and Adjusted R-squared

#49 paternogbc closed 2 years ago
3
Error: two or more sister external edges have length 0, V is singular

#48 jasminelmah closed 1 year ago
6
Sign problem in phyloglmstep and phyloglm results

#47 yuxin0406 closed 1 year ago
5
phyloglm troubleshooting

#46 jakeberv closed 2 years ago
11
What's the order of residuals in the result of phyloglm?

#45 yuxin0406 closed 2 years ago
1
Using models with lambda input.

#44 ra-barber closed 2 years ago
3
added arguement check.precision in three.point.compute

#43 jboyko closed 3 years ago
0
sigma2_error bound warning

#42 pbastide closed 3 years ago
0
Add a `confint` method for `phylolm` objects

#41 pbastide closed 3 years ago
0
Check that the response is univariate (vector or only one column).

#40 pbastide closed 3 years ago
0
Handling bounds and starting values for sigma2_error (with tests).

#39 lamho86 closed 3 years ago
0
Starting values and bounds for `sigma2_error`

#38 pbastide closed 3 years ago
3
predict () does not work with 'phyloglm' object

#37 rosbakh closed 1 year ago
1
Relax dependency on R >= 3.0

#36 jmaspons closed 3 years ago
1
Minor issue when using my own transformed tree.

#35 jboyko closed 3 years ago
4
Phylolm functionality with emmeans/emtrends

#34 iausprey opened 3 years ago
1
Alpha warning when performing phylostep/phyloglmstep

#33 estherdr closed 3 years ago
1
phyloglmstep

#32 rvosa closed 4 years ago
2
phyloglmstep

#31 rvosa closed 3 years ago
2
LRT using parametric bootstrap?

#30 courtiol closed 3 years ago
1
Back-transformation of phylogenetic logistic regression

#29 rosbakh closed 4 years ago
3
Alpha parameter >50

#28 matthieu-haudiquet closed 3 years ago
17
Residuals check for phyloglm ()

#27 rosbakh closed 6 months ago
23
phylolm results do not match binary.PGLMM results. How to explain that?

#26 Jigyasa3 closed 4 years ago
3
fix #24

#25 cecileane closed 4 years ago
0
How to solve "Error in lenth(taxa_without_data) : could not find function "lenth""

#24 jeagull closed 4 years ago
2
match taxa between data and tree

#23 cecileane closed 4 years ago
0