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lamho86
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phylolm
GNU General Public License v2.0
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phylolm() obscure errors when a predictor has unused levels
#72
AMBarbosa
opened
1 month ago
1
phyloglm coefficient=0 P value=1
#71
lfdelzam
opened
2 months ago
2
Prediction accounting for phylogenetic
#70
MorceletL
opened
4 months ago
1
trouble interpreting alpha
#69
reillybren
closed
4 months ago
1
Phyloglm produces different results with normalized and raw predictor variables
#68
NB-Bio
opened
6 months ago
0
Guidance on the visualization of phylolm models
#67
MarcRieraDominguez
closed
8 months ago
0
Make logLik functions more compatible.
#66
Ax3man
closed
10 months ago
1
logLik method and compatibility with MuMIn functions
#65
MarcRieraDominguez
closed
9 months ago
2
Compatibility between phylolm and visreg
#64
MarcRieraDominguez
closed
9 months ago
2
Error in optim(par = c(startB, startlL), fn = npllh, method = "L-BFGS-B", : L-BFGS-B needs finite values of 'fn'
#63
NB-Bio
closed
8 months ago
1
null p-values for logistic phyloglm seem biased?
#62
pbradz
opened
1 year ago
1
Fitting models with REML.
#61
pbastide
closed
1 year ago
2
One-way ANOVA with phylolm
#60
matthieu-haudiquet
opened
1 year ago
3
Interpret scale parameter when estimating dispersion in Poisson model
#59
ashdederich
closed
8 months ago
1
Interpreting alpha in phyloglm
#58
Madeleinecg
closed
8 months ago
1
Different p-value for same tree with different species sort
#57
GrRomas
closed
10 months ago
3
nobs and logLik for phyloglm
#56
dramanica
closed
2 years ago
0
nobs and loglik fixes
#55
dramanica
closed
2 years ago
1
Error running phyloglm: only 0 or 1 leaf with data on all variables: not enough
#54
SidneyGouveia
closed
2 years ago
0
Best practices for phyloglm input phylogeny - ultrametric or not?
#53
marybelsoto
opened
2 years ago
2
'Both' model selection gives worse results than 'forward'?
#52
rvosa
closed
2 years ago
2
How many parameters does phylolm estimate? A comparison with caper::pgls()
#51
MarcRieraDominguez
closed
10 months ago
4
Phyloglm univariate case: testing for phylogenetic signal
#50
gcjarvis
closed
2 years ago
4
R-squared and Adjusted R-squared
#49
paternogbc
closed
2 years ago
3
Error: two or more sister external edges have length 0, V is singular
#48
jasminelmah
closed
2 years ago
6
Sign problem in phyloglmstep and phyloglm results
#47
yuxin0406
closed
2 years ago
5
phyloglm troubleshooting
#46
jakeberv
closed
2 years ago
11
What's the order of residuals in the result of phyloglm?
#45
yuxin0406
closed
3 years ago
1
Using models with lambda input.
#44
ra-barber
closed
2 years ago
3
added arguement check.precision in three.point.compute
#43
jboyko
closed
3 years ago
0
sigma2_error bound warning
#42
pbastide
closed
3 years ago
0
Add a `confint` method for `phylolm` objects
#41
pbastide
closed
3 years ago
0
Check that the response is univariate (vector or only one column).
#40
pbastide
closed
3 years ago
0
Handling bounds and starting values for sigma2_error (with tests).
#39
lamho86
closed
3 years ago
0
Starting values and bounds for `sigma2_error`
#38
pbastide
closed
3 years ago
3
predict () does not work with 'phyloglm' object
#37
rosbakh
closed
2 years ago
1
Relax dependency on R >= 3.0
#36
jmaspons
closed
3 years ago
1
Minor issue when using my own transformed tree.
#35
jboyko
closed
3 years ago
4
Phylolm functionality with emmeans/emtrends
#34
iausprey
opened
4 years ago
1
Alpha warning when performing phylostep/phyloglmstep
#33
estherdr
closed
4 years ago
1
phyloglmstep
#32
rvosa
closed
4 years ago
2
phyloglmstep
#31
rvosa
closed
4 years ago
2
LRT using parametric bootstrap?
#30
courtiol
closed
4 years ago
1
Back-transformation of phylogenetic logistic regression
#29
rosbakh
closed
4 years ago
3
Alpha parameter >50
#28
matthieu-haudiquet
closed
4 years ago
17
Residuals check for phyloglm ()
#27
rosbakh
closed
8 months ago
23
phylolm results do not match binary.PGLMM results. How to explain that?
#26
Jigyasa3
closed
4 years ago
3
fix #24
#25
cecileane
closed
5 years ago
0
How to solve "Error in lenth(taxa_without_data) : could not find function "lenth""
#24
jeagull
closed
5 years ago
2
match taxa between data and tree
#23
cecileane
closed
5 years ago
0
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