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lanl
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PyBNF
An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.
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Versions of PyBNF dependencies
#297
emitra17
opened
3 years ago
0
Fitting process stops because of high memory usage
#296
OleksiiR
closed
3 years ago
1
Error running pybnf job on SLURM cluster
#295
OleksiiR
opened
4 years ago
0
Error looking for BNG2.pl
#294
emekaamadi
opened
4 years ago
4
Update version to 1.1.1
#293
emitra17
closed
5 years ago
0
Once between
#292
emitra17
closed
5 years ago
0
Update version to 1.1.0
#291
emitra17
closed
5 years ago
0
WIP: GUI
#290
emitra17
opened
5 years ago
0
Likelihood-based qualitative objective function
#289
emitra17
closed
5 years ago
0
Use libRoadRunner saveState
#288
emitra17
opened
5 years ago
0
Data and Algorithm bug fixes
#287
emitra17
closed
5 years ago
0
DE error with population <= 2
#286
emitra17
closed
5 years ago
0
Update version to 1.0.1
#285
emitra17
closed
5 years ago
0
Windows cleanup
#284
emitra17
closed
5 years ago
0
Windows support
#283
emitra17
closed
5 years ago
1
Documentation edits
#282
emitra17
closed
5 years ago
0
Model checking crashes with "__FREE"
#281
emitra17
opened
5 years ago
0
saCeSS2 Algorithm
#280
emitra17
opened
5 years ago
0
Evaluate ABC methods
#279
emitra17
opened
5 years ago
0
Compatibility with Stan
#278
emitra17
opened
5 years ago
0
Finish GUI integration
#277
emitra17
opened
5 years ago
0
Normalization edge case
#276
emitra17
opened
5 years ago
0
Documentation - clarify location of examples
#275
emitra17
closed
5 years ago
0
Warning spam from pybnf dependencies
#274
emitra17
opened
5 years ago
6
Error for unused exp columns?
#273
emitra17
closed
5 years ago
1
Windows support
#272
emitra17
closed
5 years ago
2
BPSL grammar
#271
emitra17
opened
5 years ago
0
Hamiltonian MCMC
#270
emitra17
opened
5 years ago
1
Full-length testing
#269
emitra17
closed
5 years ago
0
Histogram bug fix
#268
emitra17
closed
5 years ago
0
Finalize first stable release
#267
emitra17
closed
5 years ago
1
Update to v0.3.3
#266
emitra17
closed
5 years ago
0
Change .con to .prop
#265
emitra17
closed
5 years ago
0
Clean up html documentation
#264
emitra17
closed
5 years ago
0
Fix documentation typo
#263
emitra17
closed
5 years ago
0
Update license to Triad
#262
emitra17
closed
5 years ago
0
Wild Bootstrap
#261
emitra17
opened
5 years ago
1
installation issue with dask.distributed?
#260
psthiagu
closed
5 years ago
10
Update to v0.3.2
#259
emitra17
closed
5 years ago
0
Fix beta_range
#258
emitra17
closed
5 years ago
0
beta_range key does not work
#257
emitra17
closed
5 years ago
1
Parallelize models
#256
emitra17
closed
5 years ago
1
Extra features for paper
#255
emitra17
closed
5 years ago
0
WIP: Reorganize cluster handling
#254
emitra17
closed
5 years ago
1
Improved algorithm backup
#253
emitra17
closed
5 years ago
0
Add the simulation_dir option
#252
emitra17
closed
5 years ago
0
Separate Simulations directory option
#251
emitra17
closed
5 years ago
0
Pip updates
#250
emitra17
closed
5 years ago
0
SBML timeout not supported if PyBNF installed through PyPI
#249
emitra17
opened
5 years ago
1
Interrupt during algorithm backup
#248
emitra17
closed
5 years ago
0
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