It's my honor to use this software from your team to incorporate multiple interaction terms .But, in my result,a lots of robust pvalue is NA. I don't know why . I hope you can give me the reason, If it is possible, please tell me how can I solve this problem .Thank you very much !
The following is my result:
SNPID CHR POS Non_Effect_Allele Effect_Allele N_Samples robust_P_Value_Marginal robust_P_Value_Interaction robust_P_Value_Joint
rs74045217 1 762330 G T 3836 0.692516 nan 0.88195
rs4970385:831489:C:T 1 831489 C T 3696 0.593046 0.240341 0.311866
rs9697642:831909:C:T 1 831909 C T 3700 0.624443 nan 0.451844
rs9697378:832060:G:A 1 832060 G A 3692 0.59016 0.014303 0.0162933
rs9697380:832066:G:C 1 832066 G C 3704 0.623068 0.717157 0.0710369
rs9697725:832112:T:C 1 832112 T C 3702 0.633098 0.193403 0.00162896
rs13302934:832178:A:G 1 832178 A G 3702 0.633098 0.193403 0.00162896
rs34017275:832297:CTG:C 1 832297 CTG C 3702 0.633098 0.193403 0.00162896
rs4500250:832318:C:A 1 832318 C A 3702 0.633098 0.193403 0.00162896
rs4553118:832398:T:C 1 832398 T C 3738 0.637158 0.127066 0.806973
rs28833197:832756:T:G 1 832756 T G 3700 0.461546 nan nan
rs28765502:832918:T:C 1 832918 T C 3702 0.404823 nan nan
It's my honor to use this software from your team to incorporate multiple interaction terms .But, in my result,a lots of robust pvalue is NA. I don't know why . I hope you can give me the reason, If it is possible, please tell me how can I solve this problem .Thank you very much ! The following is my result: SNPID CHR POS Non_Effect_Allele Effect_Allele N_Samples robust_P_Value_Marginal robust_P_Value_Interaction robust_P_Value_Joint rs74045217 1 762330 G T 3836 0.692516 nan 0.88195 rs4970385:831489:C:T 1 831489 C T 3696 0.593046 0.240341 0.311866 rs9697642:831909:C:T 1 831909 C T 3700 0.624443 nan 0.451844 rs9697378:832060:G:A 1 832060 G A 3692 0.59016 0.014303 0.0162933 rs9697380:832066:G:C 1 832066 G C 3704 0.623068 0.717157 0.0710369 rs9697725:832112:T:C 1 832112 T C 3702 0.633098 0.193403 0.00162896 rs13302934:832178:A:G 1 832178 A G 3702 0.633098 0.193403 0.00162896 rs34017275:832297:CTG:C 1 832297 CTG C 3702 0.633098 0.193403 0.00162896 rs4500250:832318:C:A 1 832318 C A 3702 0.633098 0.193403 0.00162896 rs4553118:832398:T:C 1 832398 T C 3738 0.637158 0.127066 0.806973 rs28833197:832756:T:G 1 832756 T G 3700 0.461546 nan nan rs28765502:832918:T:C 1 832918 T C 3702 0.404823 nan nan